Marcoil1.0      (C) Mauro Delorenzi

Prediction of coiled-coil domains in protein sequences
Posterior probabilities generated by a Hidden Markov Model


Information page

Address enquiries please to: Mauro.Delorenzi@isb-sib.ch


JOBNAME (optional)

SEQUENCE (max length = 11000 aa per protein)

Paste sequences in (multi)fasta format or use the file upload
(">seqname" between sequences)

Or upload sequence data file (no special characters in the address!)  


     

If you use MARCOIL you should cite this research paper:

Delorenzi M. and SpeedT., 2002.

An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.
Bioinformatics, 18(4):617-625, 2002. Abstract


PARAMETERS (optional)




1. Coiled-Coil Emission P. Matrix



2. HMM Transition P. Matrix. Either precomputed (2a, default) or user-defined (2b)

2a. Precomputed

2b. User-defined

Take the values entered below:

Parameter   i  

(default=0.0001) 

Parameter   t  

(default=0.01) 

Parameter   r  

(default= 0.00001) 


Last modified: Feb 11, 2008