G7_using_S3

Super-paramagnetic Clustering of 77 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=13)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	17		202709_at	FMOD Chr:1q32
2	26		204114_at	NID2 Chr:14q21-q22
3	25		204083_s_at	TPM2 Chr:9p13.2-p13.1
4	32		205572_at	ANGPT2 Chr:8p23.1
5	21		202998_s_at	LOXL2 Chr:8p21.3-p21.2
6	23		203851_at	IGFBP6 Chr:12q13
7	9		202112_at	VWF Chr:12p13.3
8	75		236034_at	FLJ12847 Chr:8p23.1
9	30		204844_at	ENPEP Chr:4q25
10	3		200771_at	LAMC1 Chr:1q31
11	40		211343_s_at	COL13A1 Chr:10q22
12	74		232458_at	COL3A1 Chr:2q31
13	29	G196	204682_at	LTBP2 Chr:14q24
14	6	G196	201744_s_at	LUM Chr:12q21.3-q22
15	52	G196	213125_at	OLFML2B Chr:1q23.1
16	11	G196	202291_s_at	MGP Chr:12p13.1-p12.3
17	16	G196	202465_at	PCOLCE Chr:7q22
18	59	G196	219134_at	ELTD1 Chr:1p33-p32
19	31	G196	205499_at	SRPUL Chr:xq21.33-q23
20	35	G196	209156_s_at	COL6A2 Chr:21q22.3
21	2	G196	200700_s_at	KDELR2 Chr:7p22.2
22	69	G196	226804_at	FAM20A Chr:17q24.3
23	20	G196	202952_s_at	ADAM12 Chr:10q26.3
24	47	G196	212298_at	NRP1 Chr:10p12
25	43	G196	211964_at	COL4A2 Chr:13q34
26	65	G196	225799_at	MGC4677 Chr:2p11.2
27	77	G196	241981_at	FAM20A Chr:17q24.3
28	19	G196	202878_s_at	C1QR1 Chr:20p11.22
29	34	G196	208690_s_at	PDLIM1 Chr:10q22-q26.3
30	44	G196	211966_at	COL4A2 Chr:13q34
31	68	G196	226777_at	ADAM12 Chr:10q26.3
32	66	G196	226311_at	--- ---
33	10	G196	202202_s_at	LAMA4 Chr:6q21
34	73	G196	230061_at	LOC116441 Chr:3q24
35	54	G196	213790_at	ADAM12 Chr:10q26.3
36	76	G196	237261_at	FLJ12847 Chr:8p23.1
37	70	G196	227628_at	--- ---
38	71		228776_at	--- ---
39	72		229218_at	COL1A2 Chr:7q22.1
40	28	G195	204677_at	CDH5 Chr:16q22.1
41	15	G195	202404_s_at	COL1A2 Chr:7q22.1
42	12	G195	202310_s_at	COL1A1 Chr:17q21.3-q22.1
43	36	G195	209596_at	DKFZp564I1922 Chr:xp22.33
44	45	G195	211980_at	COL4A1 Chr:13q34
45	4	G195	201438_at	COL6A3 Chr:2q37
46	18	G195	202766_s_at	FBN1 Chr:15q21.1
47	37	G195	210495_x_at	FN1 Chr:2q34
48	42	G195	211719_x_at	FN1 Chr:2q34
49	57	G195	216442_x_at	FN1 Chr:2q34
50	63	G195	224833_at	ETS1 Chr:11q23.3
51	1	G195	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
52	7	G195	201852_x_at	COL3A1 Chr:2q31
53	14	G195	202403_s_at	COL1A2 Chr:7q22.1
54	39	G195	211161_s_at	--- ---
55	56	G195	215076_s_at	COL3A1 Chr:2q31
56	64	G195	225681_at	CTHRC1 Chr:8q22.3
57	49	G195	212464_s_at	FN1 Chr:2q34
58	33		207714_s_at	SERPINH1 Chr:11q13.5
59	13		202375_at	SEC24D Chr:4q27
60	58		218729_at	LXN Chr:3q25.32
61	27	G197	204464_s_at	EDNRA Chr:4q31.22
62	22	G197	203325_s_at	COL5A1 Chr:9q34.2-q34.3
63	46	G197	211981_at	COL4A1 Chr:13q34
64	24	G197	204017_at	KDELR3 Chr:22q13.1
65	67	G197	226731_at	ITGA1 Chr:5q11.2
66	53	G197	213139_at	SNAI2 Chr:8q11
67	55	G197	214081_at	PLXDC1 Chr:17q21.1
68	38	G197	211148_s_at	ANGPT2 Chr:8p23.1
69	60	G197	219773_at	NOX4 Chr:11q14.2-q21
70	48	G197	212364_at	MYO1B Chr:2q12-q34
71	5	G197	201505_at	LAMB1 Chr:7q22
72	61	G197	221729_at	COL5A2 Chr:2q14-q32
73	41	G197	211651_s_at	LAMB1 Chr:7q22
74	50	G197	212488_at	COL5A1 Chr:9q34.2-q34.3
75	51	G197	212489_at	COL5A1 Chr:9q34.2-q34.3
76	8	G197	202007_at	NID Chr:1q43
77	62	G197	221730_at	COL5A2 Chr:2q14-q32

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	13
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:53:41

G7_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=13)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC