G3_using_S5

Super-paramagnetic Clustering of 69 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	60		239357_at	--- ---
2	52		229254_at	DKFZp761N1114 Chr:1q32.1
3	42		221217_s_at	A2BP1 Chr:16p13.3
4	2		1553422_s_at	A2BP1 Chr:16p13.3
5	24	G152 G153 G156	206678_at	GABRA1 Chr:5q34-q35
6	12	G152 G153 G156	203998_s_at	SYT1 Chr:12cen-q21
7	21	G152 G153 G156	205827_at	CCK Chr:3p22-p21.3
8	3	G152 G153 G156	1553864_at	DKFZp761H2121 Chr:10q26.13
9	63	G152 G153 G156	241399_at	TAFA2 Chr:12q13.3-q14.1
10	19	G152 G153 G156	205635_at	HAPIP Chr:3q21.2
11	68	G152 G153 G156	244118_at	GABRA1 Chr:5q34-q35
12	45	G152 G153 G156	224650_at	MAL2 Chr:8q23
13	23	G152 G153 G156	206456_at	GABRA5 Chr:15q11.2-q12
14	6	G152 G153 G156	1556351_at	HCN1 Chr:5p12
15	22	G152 G153 G156	206376_at	SLC6A15 Chr:12q21.3
16	28	G152 G153 G156	210227_at	DLGAP2 Chr:8p23
17	61	G152 G153 G156	239579_at	ABHD7 Chr:1p22.1
18	36	G152 G153 G156	219425_at	SULT4A1 Chr:22q13.2-q13.31
19	56	G152 G153 G156	232426_at	--- ---
20	41	G152 G153 G156	220359_s_at	ARPP-21 Chr:3p22.1
21	54	G153 G156	230551_at	--- ---
22	18	G153 G156	205414_s_at	KIAA0672 Chr:17p12
23	40	G153 G156	220030_at	STYK1 Chr:12p13.31
24	66	G153 G156	242404_at	--- ---
25	59	G153 G156	237384_x_at	--- ---
26	57	G153 G156	233002_at	KIAA1622 Chr:14q32.2
27	69	G153 G156	52837_at	KIAA1644 Chr:22q13
28	30	G153 G156	213921_at	SST Chr:3q28
29	31	G153 G156	214044_at	RYR2 Chr:1q42.1-q43
30	38	G153 G156	219671_at	HPCAL4 Chr:1p34.2
31	8	G156	1557122_s_at	--- ---
32	7	G156	1556366_s_at	FLJ33708 Chr:6p24.3
33	4	G156	1556095_at	UNC13C Chr:15q21.1
34	39	G156	219937_at	TRHDE Chr:12q15-q21
35	65	G156	241807_x_at	--- ---
36	53	G156	230137_at	FLJ30834 Chr:4q27
37	49	G156	227702_at	CYP4X1 Chr:1p33
38	64	G156	241672_at	LOC400120 Chr:13q13.2
39	26	G155	209726_at	CA11 Chr:19q13.3
40	29	G155	210247_at	SYN2 Chr:3p25
41	9	G154 G155	1568612_at	GABRG2 Chr:5q31.1-q33.1
42	10	G154 G155	202507_s_at	SNAP25 Chr:20p12-p11.2
43	48	G154 G155	227053_at	PACSIN1 Chr:6p21.3
44	14	G154 G155	204081_at	NRGN Chr:11q24
45	37	G154 G155	219659_at	ATP8A2 Chr:13q12-13
46	16	G154 G155	204546_at	KIAA0513 Chr:16q24.1
47	27	G154 G155	210040_at	SLC12A5 Chr:20q13.12
48	33	G154 G155	214811_at	KIAA0318 Chr:12q24.33
49	1	G154 G155	1552714_at	CREG2 Chr:2q12.1
50	13	G154 G155	203999_at	SYT1 Chr:12cen-q21
51	51	G154 G155	229039_at	SYN2 Chr:3p25
52	11	G154 G155	203798_s_at	VSNL1 Chr:2p24.3
53	55	G154 G155	231489_x_at	--- ---
54	62	G154 G155	239765_at	--- ---
55	5	G154 G155	1556096_s_at	UNC13C Chr:15q21.1
56	15	G154 G155	204229_at	SLC17A7 Chr:19q13
57	17	G154 G155	205113_at	NEF3 Chr:8p21
58	34	G154 G155	214945_at	NY-REN-7 Chr:5q35.3
59	20	G154 G155	205691_at	SYNGR3 Chr:16p13
60	46	G154 G155	225111_s_at	NAPB Chr:20p12.3-p11.21
61	35	G155	214956_at	--- ---
62	47	G155	226086_at	SYT13 Chr:11p12-p11
63	58	G155	236456_at	PTPN5 Chr:11p15.1
64	44	G155	224209_s_at	GDA Chr:9q21.11-21.33
65	25	G155	206780_at	GAD2 Chr:10p11.23
66	50	G155	228262_at	FLJ14503 Chr:xp22.13
67	67	G155	243929_at	--- ---
68	32		214098_at	KIAA1107 Chr:1p22.1
69	43		224164_at	TPM3 Chr:1q21.2

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:34:27

G3_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC