G27_using_S2

Super-paramagnetic Clustering of 79 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=21)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	14		205714_s_at	ZMYND10 Chr:3p21.3
2	20		218876_at	CGI-38 Chr:16q22.1
3	29		220636_at	DNAI2 Chr:17q25
4	42		229012_at	C9orf24 Chr:9p13.2
5	8		1562921_at	--- Chr:22q13.2
6	23		219833_s_at	EFHC1 Chr:6p12.3
7	18	G399	208140_s_at	DKFZP586M1120 Chr:17p11.2
8	10	G399	203397_s_at	GALNT3 Chr:2q24-q31
9	6	G399	1558077_s_at	MDH1B Chr:2q34
10	4	G399	1554528_at	AAT1 Chr:3q12-q13.3
11	3	G399	1554298_a_at	FLJ33620 Chr:3q26.2
12	11	G399	204187_at	GMPR Chr:6p23
13	46	G399	229816_at	FLJ23129 Chr:1p31.3
14	13	G399	205406_s_at	SPA17 Chr:11q24.2
15	21	G399	219229_at	SLCO3A1 Chr:15q26
16	48	G399	230763_at	LOC128153 Chr:1q41
17	22	G399	219703_at	MNS1 Chr:15q21.2
18	27	G399	220390_at	FLJ23598 Chr:11p11.2
19	19	G399	210117_at	SPAG1 Chr:8q22.2
20	28	G399	220591_s_at	FLJ22843 Chr:xp11.4
21	25	G399	220269_at	FLJ23049 Chr:3q26.2
22	32	G399	223924_at	DKFZP434H0115 Chr:17q21.31
23	1	G399	1553635_s_at	FLJ40873 Chr:1p31.3
24	66	G399	237281_at	AKAP28 Chr:xq25
25	24	G399	220168_at	CASC1 Chr:12p12.1
26	36	G399	226872_at	RFX2 Chr:19p13.3-p13.2
27	37	G399	227081_at	DNALI1 Chr:1p35.1
28	39	G399	227105_at	FLJ22490 Chr:8q13.1
29	41	G399	228450_at	LOC144100 Chr:11p15.2-p15.1
30	44	G399	229170_s_at	TTC18 Chr:10q22.3
31	47	G399	230093_at	TSGA2 Chr:21q22.3
32	64	G399	236915_at	--- ---
33	26	G399	220302_at	MAK Chr:6q22
34	67	G399	238116_at	DNCL2B Chr:16q23.3
35	71	G399	239916_at	LOC146845 Chr:17p13.1
36	70	G399	239776_at	--- Chr:5q22.1
37	17	G399	207797_s_at	DKFZp761O0113 Chr:4q35.1
38	73	G399	240857_at	DNAH9 Chr:17p12
39	50	G399	231077_at	MGC20470 Chr:11p15.4
40	51	G399	231084_at	C10orf79 Chr:10q25.1
41	2	G399	1554140_at	FLJ23129 Chr:1p31.3
42	60	G399	236222_at	AAT1 Chr:3q12-q13.3
43	74	G399	241310_at	--- ---
44	5	G399	1557636_a_at	LOC136288 Chr:7p12.3
45	40	G399	228100_at	LOC128344 Chr:1p13.2
46	43	G399	229169_at	TTC18 Chr:10q22.3
47	49	G399	231068_at	FLJ31196 Chr:17p11.2
48	12	G399	205186_at	DNALI1 Chr:1p35.1
49	63	G399	236909_at	LOC129881 Chr:2q31.1
50	30	G399	222890_at	HSPC065 Chr:16q13
51	53	G399	231380_at	VEST1 Chr:8q13
52	55		231729_s_at	CAPS Chr:19p13.3
53	45		229331_at	LOC132671 Chr:4q12
54	65		237168_at	KIAA0266 Chr:13q12.2-q13.3
55	31		223642_at	ZIC2 Chr:13q32
56	33		224463_s_at	MGC13040 Chr:11q22.2
57	34		225656_at	EFHC1 Chr:6p12.3
58	38		227091_at	KIAA1505 Chr:7p12.3
59	77		243198_at	LOC161577 Chr:15q21.2
60	56		232984_at	HYDIN Chr:16q22.2
61	69		238584_at	FLJ22527 Chr:2q37.3
62	9		202587_s_at	AK1 Chr:9q34.1
63	15		206197_at	NME5 Chr:5q31
64	61		236325_at	--- ---
65	68		238327_at	ECGF1 Chr:22q13.33
66	78		243802_at	FLJ40427 Chr:3p21.2
67	72		240065_at	FLJ25333 Chr:5q15
68	75		241470_x_at	--- ---
69	79		64900_at	CHST5 Chr:16q22.3
70	57		233516_s_at	PF6 Chr:1p12
71	58		235658_at	--- ---
72	7		1558487_a_at	HNLF Chr:7p13
73	52		231319_x_at	KIF9 Chr:3p21.31
74	54		231549_at	MGC35194 Chr:1p36.21
75	16		207624_s_at	RPGR Chr:xp11.4
76	59		235946_at	FLJ32783 Chr:Xp11.23
77	76		243087_at	NYD-SP29 Chr:1p22.3
78	35		226558_at	--- ---
79	62		236717_at	LOC165186 Chr:2p23.3

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	21
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 05:02:56

G27_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=21)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC