G22_using_S3

Super-paramagnetic Clustering of 34 points in a 4 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=9)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		201925_s_at		DAF Chr:1q32
2	7		203924_at		GSTA1 Chr:6p12.1
3	1		1559282_at		--- ---
4	25		227646_at		EBF Chr:5q34
5	17		212713_at		MFAP4 Chr:17p11.2
6	32		237945_at		--- ---
7	29		233261_at		EBF Chr:5q34
8	8		204548_at		STAR Chr:8p11.2
9	16		210794_s_at		MEG3 Chr:14q32
10	11		207002_s_at		PLAGL1 Chr:6q24-q25
11	6		203477_at		COL15A1 Chr:9q21-q22
12	14		209560_s_at		DLK1 Chr:14q32
13	15		210002_at		GATA6 Chr:18q11.1-q11.2
14	13		209318_x_at		PLAGL1 Chr:6q24-q25
15	3		202409_at		--- ---
16	19		213943_at		TWIST1 Chr:7p21.2
17	22		226211_at		MEG3 Chr:14q32
18	4		202410_x_at		IGF2 Chr:11p15.5
19	21		226210_s_at		MEG3 Chr:14q32
20	33		239006_at		SLC26A7 Chr:8q23
21	23		226905_at		MGC45871 Chr:17p13
22	27		227947_at		C6orf56 Chr:6q24.1
23	34		242856_at		--- ---
24	9		205498_at		GHR Chr:5p13-p12
25	10		206953_s_at		LPHN2 Chr:1p31.1
26	5		202965_s_at		CAPN6 Chr:xq23
27	12		207943_x_at		PLAGL1 Chr:6q24-q25
28	18		212956_at		KIAA0882 Chr:4q31.1
29	30		234994_at		KIAA1913 Chr:6q23.1
30	31		236220_at		--- ---
31	24		227297_at		ITGA9 Chr:3p21.3
32	26		227911_at		FLJ10312 Chr:18p11.23
33	20		215513_at		HYMAI Chr:6q24
34	28		232355_at		--- ---

Samples Names

1	2			148.cel
2	3			1553.cel
3	1			1076.cel
4	4			1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 03:35:50