G20_using_S3

Super-paramagnetic Clustering of 24 points in a 4 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Genes

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	4		212249_at		PIK3R1 Chr:5q13.1
2	19		241060_x_at		--- ---
3	14		224829_at		CPEB4 Chr:5q21
4	7		213684_s_at		LIM Chr:4q22
5	9		215342_s_at		HHL Chr:1q24
6	17		235803_at		--- ---
7	18		236251_at		--- ---
8	22		243240_at		--- ---
9	24		244112_x_at		--- ---
10	1		1559391_s_at		--- ---
11	13		224828_at		CPEB4 Chr:5q21
12	12		223185_s_at		BHLHB3 Chr:12p11.23-p12.1
13	8		213998_s_at		DDX17 Chr:22q13.1
14	11		223079_s_at		GLS Chr:2q32-q34
15	2		204964_s_at		SSPN Chr:12p11.2
16	15		228471_at		LOC91526 Chr:2q33.1
17	23		244045_at		--- ---
18	10		222787_s_at		FLJ11273 Chr:7p21.3
19	16		231109_at		--- ---
20	3		209023_s_at		STAG2 Chr:xq25
21	20		242579_at		--- ---
22	21		243149_at		--- ---
23	5		212762_s_at		TCF7L2 Chr:10q25.3
24	6		212993_at		--- ---

Samples Names

1	2			148.cel
2	3			1553.cel
3	1			1076.cel
4	4			1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:59:54