G17_using_S2

Super-paramagnetic Clustering of 141 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=41)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	5	1556095_at	UNC13C Chr:15q21.1
2	61	214376_at	--- ---
3	12	202073_at	OPTN Chr:10p14
4	55	213904_at	--- ---
5	8	1556366_s_at	FLJ33708 Chr:6p24.3
6	46	209726_at	CA11 Chr:19q13.3
7	49	210227_at	DLGAP2 Chr:8p23
8	57	214044_at	RYR2 Chr:1q42.1-q43
9	60	214230_at	CDC42 Chr:1p36.1
10	68	219308_s_at	AK5 Chr:1p31
11	3	1553864_at	DKFZp761H2121 Chr:10q26.13
12	2	1553422_s_at	A2BP1 Chr:16p13.3
13	7	1556351_at	HCN1 Chr:5p12
14	25	204546_at	KIAA0513 Chr:16q24.1
15	35	205635_at	HAPIP Chr:3q21.2
16	63	214945_at	NY-REN-7 Chr:5q35.3
17	65	215241_at	TMEM16C Chr:11p14.3
18	9	1557122_s_at	--- ---
19	18	203999_at	SYT1 Chr:12cen-q21
20	21	204229_at	SLC17A7 Chr:19q13
21	32	205113_at	NEF3 Chr:8p21
22	40	206376_at	SLC6A15 Chr:12q21.3
23	56	213921_at	SST Chr:3q28
24	10	1559545_at	--- ---
25	16	203798_s_at	VSNL1 Chr:2p24.3
26	17	203998_s_at	SYT1 Chr:12cen-q21
27	19	204081_at	NRGN Chr:11q24
28	20	204134_at	PDE2A Chr:11q13.3
29	22	204337_at	RGS4 Chr:1q23.2
30	23	204339_s_at	RGS4 Chr:1q23.2
31	26	204697_s_at	CHGA Chr:14q32
32	27	204722_at	SCN3B Chr:11q24.1
33	33	205257_s_at	AMPH Chr:7p14-p13
34	36	205691_at	SYNGR3 Chr:16p13
35	37	205827_at	CCK Chr:3p22-p21.3
36	41	206456_at	GABRA5 Chr:15q11.2-q12
37	44	206780_at	GAD2 Chr:10p11.23
38	48	210040_at	SLC12A5 Chr:20q13.12
39	50	210247_at	SYN2 Chr:3p25
40	51	210721_s_at	PAK7 Chr:20p12
41	53	213280_at	GARNL4 Chr:17p13.3
42	58	214098_at	KIAA1107 Chr:1p22.1
43	59	214111_at	OPCML Chr:11q25
44	15	202712_s_at	CKMT1 Chr:15q15
45	13	202260_s_at	STXBP1 Chr:9q34.1
46	31	204953_at	SNAP91 Chr:6q15
47	38	206013_s_at	ACTL6 Chr:7q22
48	39	206196_s_at	RPIP8 Chr:17q21.31
49	54	213307_at	SHANK2 Chr:11q13.2
50	62	214811_at	KIAA0318 Chr:12q24.33
51	67	218623_at	HMP19 Chr:5q35.2
52	90	227690_at	GABRB3 Chr:15q11.2-q12
53	97	229294_at	JPH3 Chr:16q24.3
54	99	229724_at	GABRB3 Chr:15q11.2-q12
55	126	239678_at	--- ---
56	64	214956_at	--- ---
57	69	219425_at	SULT4A1 Chr:22q13.2-q13.31
58	70	219659_at	ATP8A2 Chr:13q12-13
59	71	219671_at	HPCAL4 Chr:1p34.2
60	1	1552714_at	CREG2 Chr:2q12.1
61	75	221217_s_at	A2BP1 Chr:16p13.3
62	52	212473_s_at	MICAL2 Chr:11p15.3
63	102	230255_at	GABRD Chr:1p36.3
64	111	232411_at	--- ---
65	43	206678_at	GABRA1 Chr:5q34-q35
66	112	232426_at	--- ---
67	45	209556_at	NCDN Chr:1p34.3
68	116	235230_at	--- ---
69	11	1568612_at	GABRG2 Chr:5q31.1-q33.1
70	24	204465_s_at	INA Chr:10q24.33
71	76	223500_at	CPLX1 Chr:4p16.3
72	89	227641_at	MGC33974 Chr:16p13.3
73	92	227830_at	GABRB3 Chr:15q11.2-q12
74	77	223529_at	SYT4 Chr:18q12.3
75	29	204763_s_at	GNAO1 Chr:16q13
76	47	210016_at	MYT1L Chr:2p25.3
77	30	204869_at	PCSK2 Chr:20p11.2
78	78	223654_s_at	BRUNOL4 Chr:18q12
79	106	230698_at	--- ---
80	105	230551_at	--- ---
81	118	236448_at	UNC5A Chr:5q35.3
82	79	224164_at	TPM3 Chr:1q21.2
83	80	224209_s_at	GDA Chr:9q21.11-21.33
84	83	225111_s_at	NAPB Chr:20p12.3-p11.21
85	85	226382_at	LOC283070 Chr:10p14
86	86	227053_at	PACSIN1 Chr:6p21.3
87	87	227226_at	C6orf117 Chr:6q15
88	94	229029_at	--- ---
89	95	229039_at	SYN2 Chr:3p25
90	4	1555958_at	CRTAC1 Chr:10q22
91	34	205414_s_at	KIAA0672 Chr:17p12
92	98	229300_at	--- ---
93	74	220359_s_at	ARPP-21 Chr:3p22.1
94	137	243163_at	--- ---
95	141	52837_at	KIAA1644 Chr:22q13
96	103	230262_at	--- ---
97	104	230497_at	BRUNOL5 Chr:19p13
98	107	230932_at	--- ---
99	109	231986_at	RIMS1 Chr:6q12-q13
100	114	233139_at	--- ---
101	115	235066_at	MAP4 Chr:3p21
102	121	238786_at	--- ---
103	14	202507_s_at	SNAP25 Chr:20p12-p11.2
104	122	238966_at	BRUNOL4 Chr:18q12
105	125	239671_at	--- ---
106	128	239767_at	--- ---
107	130	241399_at	TAFA2 Chr:12q13.3-q14.1
108	133	242193_at	--- Chr:8q12.3
109	138	243666_at	BRUNOL4 Chr:18q12
110	72	219937_at	TRHDE Chr:12q15-q21
111	73	220030_at	STYK1 Chr:12p13.31
112	84	226086_at	SYT13 Chr:11p12-p11
113	129	241382_at	--- ---
114	134	242344_at	--- ---
115	91	227702_at	CYP4X1 Chr:1p33
116	119	236456_at	PTPN5 Chr:11p15.1
117	81	224650_at	MAL2 Chr:8q23
118	42	206552_s_at	TAC1 Chr:7q21-q22
119	93	228262_at	FLJ14503 Chr:xp22.13
120	124	239579_at	ABHD7 Chr:1p22.1
121	108	231489_x_at	--- ---
122	123	239357_at	--- ---
123	135	242404_at	--- ---
124	100	230076_at	FLJ10156 Chr:17p13.2
125	66	216086_at	SV2C Chr:5q13.3
126	101	230137_at	FLJ30834 Chr:4q27
127	110	232305_at	HMGCLL1 Chr:6p12.1
128	120	237384_x_at	--- ---
129	127	239765_at	--- ---
130	131	241672_at	LOC400120 Chr:13q13.2
131	6	1556096_s_at	UNC13C Chr:15q21.1
132	132	241807_x_at	--- ---
133	140	244118_at	GABRA1 Chr:5q34-q35
134	88	227240_at	NGEF Chr:2q37
135	136	242999_at	ARHGEF7 Chr:13q34
136	96	229254_at	DKFZp761N1114 Chr:1q32.1
137	113	233002_at	KIAA1622 Chr:14q32.2
138	139	243929_at	--- ---
139	28	204723_at	SCN3B Chr:11q24.1
140	82	224801_at	NDFIP2 Chr:13q22.2
141	117	236166_at	LOC285147 Chr:2p25.2

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	41
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 02:19:44

G17_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=41)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC