S6_using_G20

Super-paramagnetic Clustering of 74 points in a 24 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	37		284.cel
2	16		148.cel
3	19		1553.cel
4	4	S831	1076.cel
5	25	S831	1780.cel
6	13	S831	1437.cel
7	5	S831	12.cel
8	62	S831	574.cel
9	6	S830 S831	1284.cel
10	49	S830 S831	396.cel
11	29	S830 S831	222.cel
12	7	S830 S831	129.cel
13	52	S830 S831	458.cel
14	12	S830 S831	1430.cel
15	45	S830 S831	349.cel
16	33	S830 S831	254.cel
17	32	S830 S831	246.cel
18	64	S830 S831	65R.cel
19	38	S830 S831	288.cel
20	48	S826 S829 S830 S831	390.cel
21	51	S826 S829 S830 S831	444.cel
22	14	S826 S829 S830 S831	1453.cel
23	28	S826 S829 S830 S831	218.cel
24	21	S826 S829 S830 S831	157.cel
25	50	S826 S829 S830 S831	428.cel
26	57	S829 S830 S831	547.cel
27	56	S828 S830 S831	528bis.cel
28	35	S828 S830 S831	274.cel
29	1	S828 S830 S831	100R.cel
30	8	S828 S830 S831	1308.cel
31	22	S828 S830 S831	159.cel
32	34	S828 S830 S831	269.cel
33	39	S830 S831	30.cel
34	2	S830 S831	104.cel
35	41	S830 S831	323.cel
36	47	S830 S831	360.cel
37	27	S830 S831	190.cel
38	36	S830 S831	283.cel
39	18	S830 S831	15.cel
40	40	S830 S831	300.cel
41	70	S830 S831	93.cel
42	42	S830 S831	328.cel
43	10	S830 S831	1360.cel
44	58	S830 S831	558.cel
45	43	S830 S831	344.cel
46	44	S830 S831	345.cel
47	59	S830 S831	563.cel
48	53	S830 S831	461.cel
49	54	S830 S831	506.cel
50	15	S827 S830 S831	147.cel
51	9	S827 S830 S831	1317.cel
52	17	S827 S830 S831	1497R.cel
53	26	S827 S830 S831	1854R.cel
54	71	S827 S830 S831	94bis.cel
55	20	S827 S830 S831	155R.cel
56	3	S827 S830 S831	106.cel
57	24	S827 S830 S831	1622R.cel
58	73	S827 S830 S831	ge197.cel
59	30	S827 S830 S831	236.cel
60	63	S827 S830 S831	63.cel
61	69	S827 S830 S831	90.cel
62	23	S827 S830 S831	1621.cel
63	74	S827 S830 S831	ge205.cel
64	67	S830 S831	83.cel
65	60	S830 S831	566.cel
66	68	S830 S831	84.cel
67	65	S830 S831	70.cel
68	46	S830 S831	356bis.cel
69	11	S830 S831	1399.cel
70	61	S830 S831	57.cel
71	55	S831	527.cel
72	66	S831	80.cel
73	31		242.cel
74	72		97.cel

Genes Names

1	7	213684_s_at	LIM Chr:4q22
2	4	212249_at	PIK3R1 Chr:5q13.1
3	9	215342_s_at	HHL Chr:1q24
4	13	224828_at	CPEB4 Chr:5q21
5	6	212993_at	--- ---
6	14	224829_at	CPEB4 Chr:5q21
7	1	1559391_s_at	--- ---
8	2	204964_s_at	SSPN Chr:12p11.2
9	12	223185_s_at	BHLHB3 Chr:12p11.23-p12.1
10	8	213998_s_at	DDX17 Chr:22q13.1
11	11	223079_s_at	GLS Chr:2q32-q34
12	15	228471_at	LOC91526 Chr:2q33.1
13	5	212762_s_at	TCF7L2 Chr:10q25.3
14	10	222787_s_at	FLJ11273 Chr:7p21.3
15	16	231109_at	--- ---
16	21	243149_at	--- ---
17	17	235803_at	--- ---
18	3	209023_s_at	STAG2 Chr:xq25
19	24	244112_x_at	--- ---
20	18	236251_at	--- ---
21	22	243240_at	--- ---
22	23	244045_at	--- ---
23	19	241060_x_at	--- ---
24	20	242579_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 18:00:59

S6_using_G20

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC