S5_using_G9

Super-paramagnetic Clustering of 73 points in a 32 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	13	S530 S538	1437.cel
2	4	S530 S538	1076.cel
3	19	S530 S538	1553.cel
4	16	S530 S538	148.cel
5	25	S530 S538	1780.cel
6	72	S538	ge197.cel
7	60	S538	566.cel
8	1	S537 S538	100R.cel
9	12	S537 S538	1430.cel
10	7	S535 S537 S538	129.cel
11	15	S535 S537 S538	147.cel
12	23	S535 S537 S538	1621.cel
13	28	S535 S537 S538	218.cel
14	47	S535 S537 S538	360.cel
15	9	S535 S537 S538	1317.cel
16	5	S535 S537 S538	12.cel
17	68	S535 S537 S538	90.cel
18	17	S535 S537 S538	1497R.cel
19	57	S535 S537 S538	547.cel
20	54	S535 S537 S538	506.cel
21	26	S535 S537 S538	1854R.cel
22	35	S535 S537 S538	274.cel
23	22	S533 S535 S537 S538	159.cel
24	32	S533 S535 S537 S538	246.cel
25	43	S533 S535 S537 S538	344.cel
26	58	S533 S535 S537 S538	558.cel
27	59	S533 S535 S537 S538	563.cel
28	30	S533 S535 S537 S538	236.cel
29	51	S533 S535 S537 S538	444.cel
30	73	S533 S535 S537 S538	ge205.cel
31	39	S535 S537 S538	30.cel
32	2	S535 S537 S538	104.cel
33	42	S535 S537 S538	328.cel
34	55	S535 S537 S538	527.cel
35	34	S535 S537 S538	269.cel
36	31	S535 S537 S538	242.cel
37	11	S535 S537 S538	1399.cel
38	33	S535 S537 S538	254.cel
39	10	S535 S537 S538	1360.cel
40	8	S535 S537 S538	1308.cel
41	18	S535 S537 S538	15.cel
42	27	S535 S537 S538	190.cel
43	36	S535 S537 S538	283.cel
44	44	S535 S537 S538	345.cel
45	45	S535 S537 S538	349.cel
46	40	S535 S537 S538	300.cel
47	65	S535 S537 S538	80.cel
48	69	S535 S537 S538	93.cel
49	38	S535 S537 S538	288.cel
50	21	S531 S535 S537 S538	157.cel
51	37	S531 S535 S537 S538	284.cel
52	48	S531 S535 S537 S538	390.cel
53	52	S531 S535 S537 S538	458.cel
54	70	S531 S535 S537 S538	94bis.cel
55	56	S535 S537 S538	528bis.cel
56	64	S535 S537 S538	70.cel
57	24	S535 S537 S538	1622R.cel
58	66	S535 S537 S538	83.cel
59	46	S535 S537 S538	356bis.cel
60	20	S538	155R.cel
61	63	S538	65R.cel
62	41	S536	323.cel
63	14	S532 S534 S536	1453.cel
64	6	S532 S534 S536	1284.cel
65	29	S532 S534 S536	222.cel
66	49	S532 S534 S536	396.cel
67	50	S532 S534 S536	428.cel
68	53	S534 S536	461.cel
69	3	S534 S536	106.cel
70	61	S534 S536	57.cel
71	67	S534 S536	84.cel
72	62	S534 S536	574.cel
73	71	S534 S536	97.cel

Genes Names

1	3	200632_s_at	NDRG1 Chr:8q24.3
2	6	202497_x_at	SLC2A3 Chr:12p13.3
3	11	203108_at	RAI3 Chr:12p13-p12.3
4	7	202627_s_at	SERPINE1 Chr:7q21.3-q22
5	8	202859_x_at	IL8 Chr:4q13-q21
6	13	203438_at	STC2 Chr:5q35.2
7	9	202912_at	ADM Chr:11p15.4
8	10	202934_at	HK2 Chr:2p13
9	19	212171_x_at	VEGF Chr:6p12
10	5	201169_s_at	BHLHB2 Chr:3p26
11	2	1554452_a_at	HIG2 Chr:7q32.2
12	30	226452_at	PDK1 Chr:2q31.1
13	1	1553392_at	FLJ25818 Chr:17q24.1
14	16	210512_s_at	VEGF Chr:6p12
15	18	211527_x_at	VEGF Chr:6p12
16	28	222646_s_at	ERO1L Chr:14q22.1
17	4	200737_at	PGK1 Chr:xq13
18	23	218507_at	HIG2 Chr:7q32.2
19	26	221009_s_at	ANGPTL4 Chr:19p13.3
20	12	203282_at	GBE1 Chr:3p12.3
21	17	210513_s_at	VEGF Chr:6p12
22	14	204298_s_at	LOX Chr:5q23.2
23	21	215446_s_at	--- ---
24	27	221123_x_at	ZNF395 Chr:8p21.1
25	29	223216_x_at	ZNF395 Chr:8p21.1
26	22	218149_s_at	ZNF395 Chr:8p21.1
27	31	232693_s_at	ZNF395 Chr:8p21.1
28	20	212775_at	KIAA0657 Chr:2q36.1
29	15	209122_at	ADFP Chr:9p22.1-p21.3
30	25	219434_at	TREM1 Chr:6p21.1
31	32	242517_at	GPR54 Chr:19p13.3
32	24	219410_at	FLJ10134 Chr:3q12.3

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 03:46:14

S5_using_G9

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC