S5_using_G7

Super-paramagnetic Clustering of 73 points in a 77 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	15		147.cel
2	4	S528	1076.cel
3	16	S528	148.cel
4	2	S528	104.cel
5	10	S528	1360.cel
6	8	S528	1308.cel
7	18	S528	15.cel
8	44	S528	345.cel
9	36	S528	283.cel
10	65	S528	80.cel
11	69	S528	93.cel
12	19	S528	1553.cel
13	25	S528	1780.cel
14	31	S528	242.cel
15	13	S528	1437.cel
16	37	S528	284.cel
17	41		323.cel
18	1		100R.cel
19	28		218.cel
20	5		12.cel
21	23		1621.cel
22	26		1854R.cel
23	29		222.cel
24	51		444.cel
25	3		106.cel
26	53		461.cel
27	21		157.cel
28	68		90.cel
29	71		97.cel
30	17		1497R.cel
31	6		1284.cel
32	14		1453.cel
33	35		274.cel
34	43		344.cel
35	50		428.cel
36	47		360.cel
37	70		94bis.cel
38	24		1622R.cel
39	12		1430.cel
40	39		30.cel
41	46		356bis.cel
42	9		1317.cel
43	22		159.cel
44	66		83.cel
45	7		129.cel
46	45		349.cel
47	27		190.cel
48	40		300.cel
49	48		390.cel
50	52		458.cel
51	57		547.cel
52	34		269.cel
53	58		558.cel
54	73		ge205.cel
55	42		328.cel
56	54		506.cel
57	62		574.cel
58	11		1399.cel
59	49		396.cel
60	55		527.cel
61	60		566.cel
62	61		57.cel
63	64		70.cel
64	59		563.cel
65	20		155R.cel
66	32		246.cel
67	33		254.cel
68	63		65R.cel
69	67		84.cel
70	72		ge197.cel
71	30		236.cel
72	38		288.cel
73	56		528bis.cel

Genes Names

1	15	202404_s_at	COL1A2 Chr:7q22.1
2	1	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
3	39	211161_s_at	--- ---
4	56	215076_s_at	COL3A1 Chr:2q31
5	62	221730_at	COL5A2 Chr:2q14-q32
6	14	202403_s_at	COL1A2 Chr:7q22.1
7	5	201505_at	LAMB1 Chr:7q22
8	7	201852_x_at	COL3A1 Chr:2q31
9	61	221729_at	COL5A2 Chr:2q14-q32
10	6	201744_s_at	LUM Chr:12q21.3-q22
11	12	202310_s_at	COL1A1 Chr:17q21.3-q22.1
12	34	208690_s_at	PDLIM1 Chr:10q22-q26.3
13	26	204114_at	NID2 Chr:14q21-q22
14	16	202465_at	PCOLCE Chr:7q22
15	21	202998_s_at	LOXL2 Chr:8p21.3-p21.2
16	4	201438_at	COL6A3 Chr:2q37
17	11	202291_s_at	MGP Chr:12p13.1-p12.3
18	51	212489_at	COL5A1 Chr:9q34.2-q34.3
19	50	212488_at	COL5A1 Chr:9q34.2-q34.3
20	22	203325_s_at	COL5A1 Chr:9q34.2-q34.3
21	41	211651_s_at	LAMB1 Chr:7q22
22	13	202375_at	SEC24D Chr:4q27
23	47	212298_at	NRP1 Chr:10p12
24	68	226777_at	ADAM12 Chr:10q26.3
25	20	202952_s_at	ADAM12 Chr:10q26.3
26	54	213790_at	ADAM12 Chr:10q26.3
27	18	202766_s_at	FBN1 Chr:15q21.1
28	53	213139_at	SNAI2 Chr:8q11
29	72	229218_at	COL1A2 Chr:7q22.1
30	45	211980_at	COL4A1 Chr:13q34
31	3	200771_at	LAMC1 Chr:1q31
32	46	211981_at	COL4A1 Chr:13q34
33	65	225799_at	MGC4677 Chr:2p11.2
34	44	211966_at	COL4A2 Chr:13q34
35	30	204844_at	ENPEP Chr:4q25
36	67	226731_at	ITGA1 Chr:5q11.2
37	60	219773_at	NOX4 Chr:11q14.2-q21
38	32	205572_at	ANGPT2 Chr:8p23.1
39	59	219134_at	ELTD1 Chr:1p33-p32
40	28	204677_at	CDH5 Chr:16q22.1
41	48	212364_at	MYO1B Chr:2q12-q34
42	55	214081_at	PLXDC1 Chr:17q21.1
43	2	200700_s_at	KDELR2 Chr:7p22.2
44	38	211148_s_at	ANGPT2 Chr:8p23.1
45	43	211964_at	COL4A2 Chr:13q34
46	75	236034_at	FLJ12847 Chr:8p23.1
47	76	237261_at	FLJ12847 Chr:8p23.1
48	8	202007_at	NID Chr:1q43
49	19	202878_s_at	C1QR1 Chr:20p11.22
50	37	210495_x_at	FN1 Chr:2q34
51	57	216442_x_at	FN1 Chr:2q34
52	25	204083_s_at	TPM2 Chr:9p13.2-p13.1
53	29	204682_at	LTBP2 Chr:14q24
54	10	202202_s_at	LAMA4 Chr:6q21
55	27	204464_s_at	EDNRA Chr:4q31.22
56	33	207714_s_at	SERPINH1 Chr:11q13.5
57	42	211719_x_at	FN1 Chr:2q34
58	49	212464_s_at	FN1 Chr:2q34
59	58	218729_at	LXN Chr:3q25.32
60	64	225681_at	CTHRC1 Chr:8q22.3
61	71	228776_at	--- ---
62	66	226311_at	--- ---
63	74	232458_at	COL3A1 Chr:2q31
64	9	202112_at	VWF Chr:12p13.3
65	73	230061_at	LOC116441 Chr:3q24
66	31	205499_at	SRPUL Chr:xq21.33-q23
67	17	202709_at	FMOD Chr:1q32
68	36	209596_at	DKFZp564I1922 Chr:xp22.33
69	40	211343_s_at	COL13A1 Chr:10q22
70	69	226804_at	FAM20A Chr:17q24.3
71	77	241981_at	FAM20A Chr:17q24.3
72	24	204017_at	KDELR3 Chr:22q13.1
73	35	209156_s_at	COL6A2 Chr:21q22.3
74	63	224833_at	ETS1 Chr:11q23.3
75	23	203851_at	IGFBP6 Chr:12q13
76	52	213125_at	OLFML2B Chr:1q23.1
77	70	227628_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 03:08:31

S5_using_G7

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC