S5_using_G28

Super-paramagnetic Clustering of 73 points in a 20 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=5)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	37				284.cel
2	58				558.cel
3	55				527.cel
4	54				506.cel
5	57				547.cel
6	12				1430.cel
7	73				ge205.cel
8	48	S673 S683 S685			390.cel
9	18	S673 S683 S685			15.cel
10	70	S673 S683 S685			94bis.cel
11	64	S673 S683 S685			70.cel
12	20	S673 S683 S685			155R.cel
13	21	S673 S683 S685			157.cel
14	4	S679 S683 S685			1076.cel
15	16	S679 S683 S685			148.cel
16	25	S679 S683 S685			1780.cel
17	30	S679 S683 S685			236.cel
18	38	S679 S683 S685			288.cel
19	10	S683 S685			1360.cel
20	43	S675 S676 S681 S683 S685			344.cel
21	36	S675 S676 S681 S683 S685			283.cel
22	33	S675 S676 S681 S683 S685			254.cel
23	31	S675 S676 S681 S683 S685			242.cel
24	61	S676 S681 S683 S685			57.cel
25	14	S681 S683 S685			1453.cel
26	27	S681 S683 S685			190.cel
27	68	S681 S683 S685			90.cel
28	26	S683 S685			1854R.cel
29	44	S683 S685			345.cel
30	13	S685			1437.cel
31	1	S685			100R.cel
32	19	S685			1553.cel
33	56	S685			528bis.cel
34	53				461.cel
35	65				80.cel
36	35	S672 S680			274.cel
37	52	S672 S680			458.cel
38	51	S672 S680			444.cel
39	39	S672 S680			30.cel
40	72	S680			ge197.cel
41	60	S680			566.cel
42	47	S680			360.cel
43	28	S684			218.cel
44	46	S684			356bis.cel
45	71	S684			97.cel
46	15	S674 S677 S682 S684			147.cel
47	50	S674 S677 S682 S684			428.cel
48	66	S674 S677 S682 S684			83.cel
49	59	S674 S677 S682 S684			563.cel
50	17	S674 S677 S682 S684			1497R.cel
51	29	S674 S677 S682 S684			222.cel
52	40	S674 S677 S682 S684			300.cel
53	42	S674 S677 S682 S684			328.cel
54	11	S677 S682 S684			1399.cel
55	23	S678 S682 S684			1621.cel
56	24	S678 S682 S684			1622R.cel
57	49	S678 S682 S684			396.cel
58	8	S678 S682 S684			1308.cel
59	32	S678 S682 S684			246.cel
60	22	S682 S684			159.cel
61	6	S684			1284.cel
62	9	S684			1317.cel
63	41				323.cel
64	63				65R.cel
65	2				104.cel
66	34				269.cel
67	67				84.cel
68	69				93.cel
69	5				12.cel
70	45				349.cel
71	62				574.cel
72	3				106.cel
73	7				129.cel

Genes Names

1	2	204121_at		GADD45G Chr:9q22.1-q22.2
2	14	229400_at		HOXD10 Chr:2q31.1
3	18	238847_at		--- ---
4	5	206858_s_at		HOXC6 Chr:12q13.3
5	6	209905_at		HOXA9 Chr:7p15-p14
6	9	214651_s_at		HOXA9 Chr:7p15-p14
7	3	204362_at		SCAP2 Chr:7p21-p15
8	10	225639_at		SCAP2 Chr:7p21-p15
9	8	213844_at		HOXA5 Chr:7p15-p14
10	7	213150_at		HOXA10 Chr:7p15-p14
11	11	226582_at		--- Chr:12q13.13
12	1	1557051_s_at		--- ---
13	13	228642_at		--- ---
14	16	235521_at		HOXA3 Chr:7p15-p14
15	17	235753_at		--- ---
16	19	239153_at		--- Chr:12q13.13
17	12	228564_at		LOC375295 Chr:2q31.2
18	4	205522_at		HOXD4 Chr:2q31.1
19	15	231906_at		HOXD8 Chr:2q31.1
20	20	244521_at		--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 13-Aug-2004 10:06:48