S4_using_G22

Super-paramagnetic Clustering of 69 points in a 34 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=9)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	28	S437			246.cel
2	13	S436 S437			1453.cel
3	17	S436 S437			155R.cel
4	34	S436 S437			288.cel
5	29	S436 S437			254.cel
6	59	S436 S437			65R.cel
7	2				104.cel
8	12				1437.cel
9	22				1854R.cel
10	23				190.cel
11	14				147.cel
12	1				100R.cel
13	20				1621.cel
14	25				222.cel
15	5				1284.cel
16	32				283.cel
17	40				345.cel
18	64				90.cel
19	37				323.cel
20	8				1317.cel
21	31				274.cel
22	39				344.cel
23	38				328.cel
24	27				242.cel
25	45				396.cel
26	30				269.cel
27	62				83.cel
28	15				1497R.cel
29	19				159.cel
30	21				1622R.cel
31	24				218.cel
32	41				349.cel
33	47				444.cel
34	18				157.cel
35	42				356bis.cel
36	48				458.cel
37	35				30.cel
38	66				94bis.cel
39	6				129.cel
40	16				15.cel
41	36				300.cel
42	49				461.cel
43	63				84.cel
44	7				1308.cel
45	69				ge205.cel
46	9				1360.cel
47	26				236.cel
48	44				390.cel
49	65				93.cel
50	61				80.cel
51	54				558.cel
52	68				ge197.cel
53	51				527.cel
54	67				97.cel
55	46				428.cel
56	57				57.cel
57	58				574.cel
58	3				106.cel
59	52				528bis.cel
60	33				284.cel
61	53				547.cel
62	11				1430.cel
63	10				1399.cel
64	50				506.cel
65	60				70.cel
66	56				566.cel
67	55				563.cel
68	4				12.cel
69	43				360.cel

Genes Names

1	9	205498_at		GHR Chr:5p13-p12
2	10	206953_s_at		LPHN2 Chr:1p31.1
3	2	201925_s_at		DAF Chr:1q32
4	21	226210_s_at		MEG3 Chr:14q32
5	22	226211_at		MEG3 Chr:14q32
6	3	202409_at		--- ---
7	4	202410_x_at		IGF2 Chr:11p15.5
8	6	203477_at		COL15A1 Chr:9q21-q22
9	11	207002_s_at		PLAGL1 Chr:6q24-q25
10	12	207943_x_at		PLAGL1 Chr:6q24-q25
11	13	209318_x_at		PLAGL1 Chr:6q24-q25
12	20	215513_at		HYMAI Chr:6q24
13	28	232355_at		--- ---
14	7	203924_at		GSTA1 Chr:6p12.1
15	8	204548_at		STAR Chr:8p11.2
16	5	202965_s_at		CAPN6 Chr:xq23
17	17	212713_at		MFAP4 Chr:17p11.2
18	14	209560_s_at		DLK1 Chr:14q32
19	15	210002_at		GATA6 Chr:18q11.1-q11.2
20	1	1559282_at		--- ---
21	24	227297_at		ITGA9 Chr:3p21.3
22	26	227911_at		FLJ10312 Chr:18p11.23
23	27	227947_at		C6orf56 Chr:6q24.1
24	31	236220_at		--- ---
25	33	239006_at		SLC26A7 Chr:8q23
26	19	213943_at		TWIST1 Chr:7p21.2
27	32	237945_at		--- ---
28	34	242856_at		--- ---
29	23	226905_at		MGC45871 Chr:17p13
30	25	227646_at		EBF Chr:5q34
31	29	233261_at		EBF Chr:5q34
32	16	210794_s_at		MEG3 Chr:14q32
33	18	212956_at		KIAA0882 Chr:4q31.1
34	30	234994_at		KIAA1913 Chr:6q23.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	9
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 22:38:26