S4_using_G11

Super-paramagnetic Clustering of 69 points in a 15 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=4)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1	S360 S362 S368 S370			100R.cel
2	50	S360 S362 S368 S370			506.cel
3	54	S360 S362 S368 S370			558.cel
4	39	S360 S362 S368 S370			344.cel
5	12	S360 S362 S368 S370			1437.cel
6	28	S360 S362 S368 S370			246.cel
7	60	S360 S362 S368 S370			70.cel
8	44	S360 S362 S368 S370			390.cel
9	65	S360 S362 S368 S370			93.cel
10	47	S362 S368 S370			444.cel
11	56	S368 S370			566.cel
12	24	S368 S370			218.cel
13	29	S368 S370			254.cel
14	49	S368 S370			461.cel
15	23	S361 S368 S370			190.cel
16	16	S361 S368 S370			15.cel
17	9	S361 S368 S370			1360.cel
18	57	S361 S368 S370			57.cel
19	13	S370			1453.cel
20	2	S370			104.cel
21	68	S370			ge197.cel
22	33	S359 S366			284.cel
23	10	S359 S366			1399.cel
24	62	S359 S366			83.cel
25	3	S359 S366			106.cel
26	11	S366			1430.cel
27	6	S366			129.cel
28	45				396.cel
29	67				97.cel
30	25				222.cel
31	69				ge205.cel
32	40				345.cel
33	66				94bis.cel
34	15	S358 S367			1497R.cel
35	14	S358 S367			147.cel
36	64	S358 S367			90.cel
37	46	S358 S367			428.cel
38	18	S358 S367			157.cel
39	42	S358 S367			356bis.cel
40	20	S367			1621.cel
41	22	S367			1854R.cel
42	48	S367			458.cel
43	43	S363 S367			360.cel
44	8	S363 S367			1317.cel
45	5	S363 S367			1284.cel
46	21	S363 S367			1622R.cel
47	31	S363 S367			274.cel
48	52	S365			528bis.cel
49	51	S365			527.cel
50	7	S365			1308.cel
51	30	S365			269.cel
52	27	S364 S369			242.cel
53	38	S364 S369			328.cel
54	55	S364 S369			563.cel
55	41	S364 S369			349.cel
56	35	S364 S369			30.cel
57	36	S364 S369			300.cel
58	4	S369			12.cel
59	58	S369			574.cel
60	53				547.cel
61	19				159.cel
62	61				80.cel
63	17				155R.cel
64	59				65R.cel
65	34				288.cel
66	26	S371			236.cel
67	32	S371			283.cel
68	37	S371			323.cel
69	63	S371			84.cel

Genes Names

1	8	206915_at		NKX2-2 Chr:20pter-q11.23
2	2	201416_at		SOX4 Chr:6p22.3
3	3	201417_at		SOX4 Chr:6p22.3
4	1	1569316_at		--- ---
5	4	204913_s_at		SOX11 Chr:2p25
6	5	204914_s_at		SOX11 Chr:2p25
7	6	204915_s_at		SOX11 Chr:2p25
8	14	229700_at		LOC148203 Chr:19p13.11
9	7	205347_s_at		TMSNB Chr:xq21.33-q22.3
10	12	228144_at		ZNF300 Chr:5q33.1
11	9	213668_s_at		SOX4 Chr:6p22.3
12	11	227921_at		--- ---
13	10	220898_at		--- ---
14	15	232668_at		--- ---
15	13	228790_at		MGC39325 Chr:8q12.1

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	4
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 19:34:14