S2_using_G25

Super-paramagnetic Clustering of 4 points in a 18 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=1)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1				1357.cel
2	2				1795R.cel
3	3				1869RR.cel
4	4				55.cel

Genes Names

1	5	209692_at		EYA2 Chr:20q13.1
2	2	201984_s_at		EGFR Chr:7p12
3	4	203484_at		SEC61G Chr:7p11.2
4	8	228307_at		EMILIN3 Chr:20q11.2-q12
5	9	232120_at		--- ---
6	14	232925_at		--- ---
7	16	233025_at		PDZK3 Chr:5p13.3
8	18	243327_at		--- ---
9	1	201983_s_at		EGFR Chr:7p12
10	7	224999_at		--- ---
11	10	232224_at		MASP1 Chr:3q27-q28
12	6	210135_s_at		SHOX2 Chr:3q25-q26.1
13	12	232541_at		--- ---
14	17	233044_at		--- ---
15	15	232935_at		--- ---
16	13	232882_at		--- ---
17	3	203373_at		SOCS2 Chr:12q
18	11	232539_at		--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	1
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 13:52:52