S1_using_G28

Super-paramagnetic Clustering of 84 points in a 20 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	31		1869RR.cel
2	29		1795R.cel
3	66	S268	55.cel
4	8	S268	1297.cel
5	25	S268	161.cel
6	33	S268	211.cel
7	68	S268	563.cel
8	35	S267 S268	218.cel
9	9	S265 S267 S268	1308.cel
10	13	S265 S267 S268	1399.cel
11	36	S265 S267 S268	222.cel
12	17	S265 S267 S268	147.cel
13	6	S265 S267 S268	1284.cel
14	26	S265 S267 S268	1621.cel
15	27	S265 S267 S268	1622R.cel
16	48	S265 S267 S268	323.cel
17	39	S265 S267 S268	246.cel
18	56	S265 S267 S268	396.cel
19	19	S265 S267 S268	1497R.cel
20	24	S265 S267 S268	159.cel
21	47	S265 S267 S268	300.cel
22	49	S265 S267 S268	328.cel
23	10	S265 S267 S268	1317.cel
24	57	S265 S267 S268	428.cel
25	53	S265 S267 S268	356bis.cel
26	82	S265 S267 S268	97.cel
27	1	S267 S268	100R.cel
28	11	S267 S268	1357.cel
29	20	S264 S267 S268	15.cel
30	18	S264 S267 S268	148.cel
31	4	S264 S267 S268	1076.cel
32	28	S264 S267 S268	1780.cel
33	22	S264 S267 S268	155R.cel
34	45	S264 S267 S268	288.cel
35	55	S264 S267 S268	390.cel
36	37	S264 S267 S268	236.cel
37	30	S264 S267 S268	1854R.cel
38	23	S264 S267 S268	157.cel
39	12	S264 S267 S268	1360.cel
40	70	S264 S267 S268	57.cel
41	32	S264 S267 S268	190.cel
42	38	S264 S267 S268	242.cel
43	40	S264 S267 S268	254.cel
44	43	S264 S267 S268	283.cel
45	16	S264 S267 S268	1453.cel
46	51	S264 S267 S268	345.cel
47	79	S264 S267 S268	90.cel
48	21	S264 S267 S268	1553.cel
49	50	S264 S267 S268	344.cel
50	63	S264 S267 S268	528bis.cel
51	75	S264 S267 S268	70.cel
52	15	S264 S267 S268	1437.cel
53	81	S264 S267 S268	94bis.cel
54	76	S264 S267 S268	80.cel
55	61	S264 S267 S268	506.cel
56	62	S264 S267 S268	527.cel
57	14	S267 S268	1430.cel
58	65	S267 S268	547.cel
59	84	S267 S268	ge205.cel
60	2	S267 S268	104.cel
61	3	S267 S268	106.cel
62	83	S267 S268	ge197.cel
63	69	S267 S268	566.cel
64	41	S267 S268	269.cel
65	54	S266 S267 S268	360.cel
66	42	S263 S266 S267 S268	274.cel
67	46	S263 S266 S267 S268	30.cel
68	58	S263 S266 S267 S268	444.cel
69	59	S263 S266 S267 S268	458.cel
70	60	S267 S268	461.cel
71	52	S267 S268	349.cel
72	5	S267 S268	12.cel
73	71	S267 S268	574.cel
74	73	S267 S268	63.cel
75	74	S267 S268	65R.cel
76	78	S267 S268	84.cel
77	80	S267 S268	93.cel
78	7	S268	129.cel
79	44	S268	284.cel
80	67	S268	558.cel
81	34		212R.cel
82	72		57R.cel
83	64		534.cel
84	77		83.cel

Genes Names

1	2	204121_at	GADD45G Chr:9q22.1-q22.2
2	14	229400_at	HOXD10 Chr:2q31.1
3	18	238847_at	--- ---
4	5	206858_s_at	HOXC6 Chr:12q13.3
5	6	209905_at	HOXA9 Chr:7p15-p14
6	9	214651_s_at	HOXA9 Chr:7p15-p14
7	3	204362_at	SCAP2 Chr:7p21-p15
8	10	225639_at	SCAP2 Chr:7p21-p15
9	8	213844_at	HOXA5 Chr:7p15-p14
10	7	213150_at	HOXA10 Chr:7p15-p14
11	11	226582_at	--- Chr:12q13.13
12	1	1557051_s_at	--- ---
13	13	228642_at	--- ---
14	16	235521_at	HOXA3 Chr:7p15-p14
15	17	235753_at	--- ---
16	19	239153_at	--- Chr:12q13.13
17	12	228564_at	LOC375295 Chr:2q31.2
18	4	205522_at	HOXD4 Chr:2q31.1
19	15	231906_at	HOXD8 Chr:2q31.1
20	20	244521_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 12:32:11

S1_using_G28

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC