S1_using_G25

Super-paramagnetic Clustering of 84 points in a 18 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=4)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	1		100R.cel
2	51		345.cel
3	55	S231 S234	390.cel
4	23	S231 S234	157.cel
5	20	S224 S231 S234	15.cel
6	44	S224 S231 S234	284.cel
7	76	S224 S231 S234	80.cel
8	34	S224 S231 S234	212R.cel
9	52	S224 S231 S234	349.cel
10	17	S221 S223 S234	147.cel
11	41	S221 S223 S234	269.cel
12	9	S221 S223 S234	1308.cel
13	46	S221 S223 S234	30.cel
14	15	S223 S234	1437.cel
15	84	S223 S234	ge205.cel
16	24	S223 S234	159.cel
17	35	S223 S234	218.cel
18	53	S223 S234	356bis.cel
19	56	S234	396.cel
20	82	S234	97.cel
21	26	S230 S234	1621.cel
22	27	S230 S234	1622R.cel
23	62	S230 S234	527.cel
24	58	S230 S234	444.cel
25	38	S230 S234	242.cel
26	8		1297.cel
27	77		83.cel
28	11		1357.cel
29	12		1360.cel
30	5		12.cel
31	68		563.cel
32	2		104.cel
33	25		161.cel
34	28	S219 S222 S226	1780.cel
35	21	S219 S222 S226	1553.cel
36	13	S219 S222 S226	1399.cel
37	73	S219 S222 S226	63.cel
38	66	S219 S222 S226	55.cel
39	78	S219 S222 S226	84.cel
40	4	S222 S226	1076.cel
41	18	S222 S226	148.cel
42	70	S226	57.cel
43	64		534.cel
44	22		155R.cel
45	10		1317.cel
46	75		70.cel
47	83		ge197.cel
48	67	S218 S227 S233	558.cel
49	7	S218 S227 S233	129.cel
50	50	S218 S227 S233	344.cel
51	39	S218 S227 S233	246.cel
52	80	S227 S233	93.cel
53	33	S227 S233	211.cel
54	71	S227 S233	574.cel
55	37	S229 S233	236.cel
56	63	S229 S233	528bis.cel
57	43	S229 S233	283.cel
58	40	S229 S233	254.cel
59	60	S229 S233	461.cel
60	3	S229 S233	106.cel
61	54	S229 S233	360.cel
62	16	S233	1453.cel
63	29	S228	1795R.cel
64	31	S228	1869RR.cel
65	65	S228	547.cel
66	69	S228	566.cel
67	57	S228	428.cel
68	30	S232 S235	1854R.cel
69	49	S232 S235	328.cel
70	45	S225 S232 S235	288.cel
71	42	S225 S232 S235	274.cel
72	81	S225 S232 S235	94bis.cel
73	19	S225 S232 S235	1497R.cel
74	61	S225 S232 S235	506.cel
75	74	S232 S235	65R.cel
76	79	S220 S232 S235	90.cel
77	6	S220 S232 S235	1284.cel
78	36	S220 S232 S235	222.cel
79	48	S220 S232 S235	323.cel
80	72	S220 S232 S235	57R.cel
81	14	S235	1430.cel
82	47	S235	300.cel
83	32		190.cel
84	59		458.cel

Genes Names

1	5	209692_at	EYA2 Chr:20q13.1
2	2	201984_s_at	EGFR Chr:7p12
3	4	203484_at	SEC61G Chr:7p11.2
4	8	228307_at	EMILIN3 Chr:20q11.2-q12
5	9	232120_at	--- ---
6	14	232925_at	--- ---
7	16	233025_at	PDZK3 Chr:5p13.3
8	18	243327_at	--- ---
9	1	201983_s_at	EGFR Chr:7p12
10	7	224999_at	--- ---
11	10	232224_at	MASP1 Chr:3q27-q28
12	6	210135_s_at	SHOX2 Chr:3q25-q26.1
13	12	232541_at	--- ---
14	17	233044_at	--- ---
15	15	232935_at	--- ---
16	13	232882_at	--- ---
17	3	203373_at	SOCS2 Chr:12q
18	11	232539_at	--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	4
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 11:44:42

S1_using_G25

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=4)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

Genes Names

Files for TreeView

Parameters for SPC