S1_using_G20

Super-paramagnetic Clustering of 84 points in a 24 dimensional space.

Each point is a row.

Table of Contents

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

A Dendrogram next to Reordered Data

Reordered Samples

Files for TreeView

Parameters for SPC

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Samples

1	66				55.cel
2	52				349.cel
3	71				574.cel
4	39				246.cel
5	40				254.cel
6	28				1780.cel
7	4				1076.cel
8	36	S190			222.cel
9	56	S190			396.cel
10	7	S190			129.cel
11	59	S190			458.cel
12	2				104.cel
13	6				1284.cel
14	14				1430.cel
15	16	S183 S186 S189			1453.cel
16	58	S183 S186 S189			444.cel
17	55	S183 S186 S189			390.cel
18	57	S183 S186 S189			428.cel
19	23	S186 S189			157.cel
20	35	S186 S189			218.cel
21	10	S189			1317.cel
22	25	S189			161.cel
23	5				12.cel
24	15				1437.cel
25	13				1399.cel
26	53				356bis.cel
27	70				57.cel
28	65				547.cel
29	64				534.cel
30	48	S188			323.cel
31	54	S188			360.cel
32	1	S179 S182 S188			100R.cel
33	42	S179 S182 S188			274.cel
34	63	S179 S182 S188			528bis.cel
35	9	S179 S182 S188			1308.cel
36	24	S179 S182 S188			159.cel
37	80	S182 S188			93.cel
38	51	S188			345.cel
39	41	S188			269.cel
40	46				30.cel
41	32	S181			190.cel
42	43	S181			283.cel
43	20	S181			15.cel
44	47	S181			300.cel
45	49				328.cel
46	12				1360.cel
47	67				558.cel
48	17				147.cel
49	3	S187			106.cel
50	22	S187			155R.cel
51	27	S180 S187			1622R.cel
52	83	S180 S187			ge197.cel
53	19	S180 S187			1497R.cel
54	30	S180 S187			1854R.cel
55	73	S180 S187			63.cel
56	79	S180 S187			90.cel
57	81	S180 S187			94bis.cel
58	84	S187			ge205.cel
59	31	S187			1869RR.cel
60	29	S187			1795R.cel
61	26	S187			1621.cel
62	37				236.cel
63	75				70.cel
64	45				288.cel
65	74				65R.cel
66	60	S185			461.cel
67	61	S185			506.cel
68	68	S185			563.cel
69	50	S185			344.cel
70	77				83.cel
71	69				566.cel
72	78				84.cel
73	21	S184			1553.cel
74	18	S184			148.cel
75	33	S184			211.cel
76	44	S184			284.cel
77	62				527.cel
78	76				80.cel
79	82				97.cel
80	11				1357.cel
81	38				242.cel
82	8				1297.cel
83	34				212R.cel
84	72				57R.cel

Genes Names

1	7	213684_s_at		LIM Chr:4q22
2	4	212249_at		PIK3R1 Chr:5q13.1
3	9	215342_s_at		HHL Chr:1q24
4	13	224828_at		CPEB4 Chr:5q21
5	6	212993_at		--- ---
6	14	224829_at		CPEB4 Chr:5q21
7	1	1559391_s_at		--- ---
8	2	204964_s_at		SSPN Chr:12p11.2
9	12	223185_s_at		BHLHB3 Chr:12p11.23-p12.1
10	8	213998_s_at		DDX17 Chr:22q13.1
11	11	223079_s_at		GLS Chr:2q32-q34
12	15	228471_at		LOC91526 Chr:2q33.1
13	5	212762_s_at		TCF7L2 Chr:10q25.3
14	10	222787_s_at		FLJ11273 Chr:7p21.3
15	16	231109_at		--- ---
16	21	243149_at		--- ---
17	17	235803_at		--- ---
18	3	209023_s_at		STAG2 Chr:xq25
19	24	244112_x_at		--- ---
20	18	236251_at		--- ---
21	22	243240_at		--- ---
22	23	244045_at		--- ---
23	19	241060_x_at		--- ---
24	20	242579_at		--- ---

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	1

Created by SPC_HTML_REPORT on 12-Aug-2004 10:31:35