S1_using_G2

Super-paramagnetic Clustering of 84 points in a 19 dimensional space.

Each point is a row.

Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Reordered Distance Matrix
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Samples
  • Genes
  • Files for TreeView
  • Parameters for SPC

    • PCA of points

     

    K Mutual Nearest Neighbors (K=5)

     

    Reordered Distance Matrix

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Samples
    180 S1193.cel
    215 S111437.cel
    35 S1112.cel
    432 S11190.cel
    551 S11345.cel
    663 528bis.cel
    743 283.cel
    812 1360.cel
    967 558.cel
    1025 161.cel
    1165 S7 S15 S19 S21 S22547.cel
    1277 S7 S15 S19 S21 S2283.cel
    1355 S7 S15 S19 S21 S22390.cel
    1414 S7 S15 S19 S21 S221430.cel
    1524 S7 S15 S19 S21 S22159.cel
    1647 S7 S15 S19 S21 S22300.cel
    1713 S7 S15 S19 S21 S221399.cel
    1879 S7 S15 S19 S21 S2290.cel
    1982 S7 S15 S19 S21 S2297.cel
    2057 S7 S15 S19 S21 S22428.cel
    2184 S15 S19 S21 S22ge205.cel
    2261 S15 S19 S21 S22506.cel
    2327 S19 S21 S221622R.cel
    2410 S21 S221317.cel
    2519 S21 S221497R.cel
    2642 S21 S22274.cel
    2730 S21 S221854R.cel
    281 S20 S21 S22100R.cel
    293 S20 S21 S22106.cel
    3016 S17 S20 S21 S221453.cel
    3158 S13 S17 S20 S21 S22444.cel
    3245 S13 S17 S20 S21 S22288.cel
    332 S13 S17 S20 S21 S22104.cel
    3426 S13 S17 S20 S21 S221621.cel
    3569 S13 S17 S20 S21 S22566.cel
    3675 S13 S17 S20 S21 S2270.cel
    3753 S21 S22356bis.cel
    3823 S21 S22157.cel
    3933 S21 S22211.cel
    4035 S21 S22218.cel
    4181 S21 S2294bis.cel
    4217 S8 S14 S21 S22147.cel
    4334 S8 S14 S21 S22212R.cel
    4437 S8 S14 S21 S22236.cel
    4570 S8 S14 S21 S2257.cel
    4636 S8 S14 S21 S22222.cel
    4772 S8 S14 S21 S2257R.cel
    4854 S14 S21 S22360.cel
    496 S21 S221284.cel
    5060 S21 S22461.cel
    5150 S18 S21 S22344.cel
    5249 S18 S21 S22328.cel
    5362 S18 S21 S22527.cel
    5446 S18 S21 S2230.cel
    5578 S10 S2284.cel
    5648 S10 S22323.cel
    5783 S10 S22ge197.cel
    5840 S10 S22254.cel
    5922 S10 S22155R.cel
    6039 S10 S22246.cel
    6174 S10 S2265R.cel
    6241 269.cel
    6368 563.cel
    6456 396.cel
    658 S121297.cel
    6638 S12242.cel
    677 S12129.cel
    6864 S12534.cel
    699 1308.cel
    7059 458.cel
    7131 1869RR.cel
    7276 S9 S1680.cel
    7320 S9 S1615.cel
    7418 S9 S16148.cel
    7529 S9 S161795R.cel
    7673 S9 S1663.cel
    774 S9 S161076.cel
    7866 S9 S1655.cel
    7944 S16284.cel
    8052 S16349.cel
    8171 S16574.cel
    8211 1357.cel
    8321 1553.cel
    8428 1780.cel

    Genes Names
    12201028_s_atCD99 Chr:xp22.32; yp11.3
    25201798_s_atFER1L3 Chr:10q24
    36203854_atIF Chr:4q25
    47204646_atDPYD Chr:1p22
    51200986_atSERPING1 Chr:11q12-q13.1
    612210427_x_atANXA2 Chr:15q21-q22
    74201590_x_atANXA2 Chr:15q21-q22
    814213503_x_atANXA2 Chr:15q21-q22
    911208816_x_atANXA2P1 Chr:4q21-q31
    103201426_s_atVIM Chr:10p13
    1110208747_s_atC1S Chr:12p13
    1213212067_s_atC1R Chr:12p13
    1317221773_atELK3 Chr:12q23
    148207808_s_atPROS1 Chr:3q11.2
    1515214853_s_atSHC1 Chr:1q21
    1616218983_atC1RL Chr:12p13.31
    179208659_atCLIC1 Chr:6p22.1-p21.2
    1818226621_atFGG Chr:4q28
    1919228141_at--- ---

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data

    Parameters for SPC

    K (nearest neighbors)5
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size1
    Created by SPC_HTML_REPORT on 12-Aug-2004 06:36:12