G9_using_S6

Super-paramagnetic Clustering of 32 points in a 74 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=6)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    17 202627_s_atSERPINE1 Chr:7q21.3-q22
    211 203108_atRAI3 Chr:12p13-p12.3
    35 201169_s_atBHLHB2 Chr:3p26
    425 219434_atTREM1 Chr:6p21.1
    514 204298_s_atLOX Chr:5q23.2
    621 215446_s_at--- ---
    726 221009_s_atANGPTL4 Chr:19p13.3
    83 200632_s_atNDRG1 Chr:8q24.3
    918 211527_x_atVEGF Chr:6p12
    1017 210513_s_atVEGF Chr:6p12
    1119 212171_x_atVEGF Chr:6p12
    1216 210512_s_atVEGF Chr:6p12
    139 202912_atADM Chr:11p15.4
    142 1554452_a_atHIG2 Chr:7q32.2
    1523 218507_atHIG2 Chr:7q32.2
    164 200737_atPGK1 Chr:xq13
    1728 222646_s_atERO1L Chr:14q22.1
    1830 226452_atPDK1 Chr:2q31.1
    1910 202934_atHK2 Chr:2p13
    2012 203282_atGBE1 Chr:3p12.3
    2124 219410_atFLJ10134 Chr:3q12.3
    226 202497_x_atSLC2A3 Chr:12p13.3
    238 202859_x_atIL8 Chr:4q13-q21
    2415 209122_atADFP Chr:9p22.1-p21.3
    2520 212775_atKIAA0657 Chr:2q36.1
    2622 218149_s_atZNF395 Chr:8p21.1
    2727 221123_x_atZNF395 Chr:8p21.1
    281 1553392_atFLJ25818 Chr:17q24.1
    2913 203438_atSTC2 Chr:5q35.2
    3029 223216_x_atZNF395 Chr:8p21.1
    3131 232693_s_atZNF395 Chr:8p21.1
    3232 242517_atGPR54 Chr:19p13.3

    Samples Names

    116148.cel
    2191553.cel
    341076.cel
    4251780.cel
    52104.cel
    691317.cel
    7512.cel
    83106.cel
    9121430.cel
    1057547.cel
    1162574.cel
    127129.cel
    1334269.cel
    14111399.cel
    156570.cel
    16171497R.cel
    1735274.cel
    1821157.cel
    1946356bis.cel
    20261854R.cel
    217194bis.cel
    226990.cel
    23131437.cel
    2481308.cel
    2527190.cel
    2636283.cel
    271100R.cel
    2844345.cel
    291815.cel
    306680.cel
    3140300.cel
    327093.cel
    3332246.cel
    3433254.cel
    3530236.cel
    3638288.cel
    3750428.cel
    3820155R.cel
    3947360.cel
    4060566.cel
    41141453.cel
    42231621.cel
    4337284.cel
    4442328.cel
    45101360.cel
    4645349.cel
    47241622R.cel
    4828218.cel
    4951444.cel
    5031242.cel
    5148390.cel
    5254506.cel
    5355527.cel
    5459563.cel
    5522159.cel
    563930.cel
    5774ge205.cel
    5852458.cel
    5958558.cel
    6043344.cel
    6153461.cel
    626783.cel
    6315147.cel
    6429222.cel
    6561284.cel
    6649396.cel
    676157.cel
    687297.cel
    6941323.cel
    706465R.cel
    716884.cel
    7273ge197.cel
    7356528bis.cel
    746363.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)6
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 01:11:19