G9_using_S4

Super-paramagnetic Clustering of 32 points in a 69 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=6)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    19 202912_atADM Chr:11p15.4
    223 218507_atHIG2 Chr:7q32.2
    32 1554452_a_atHIG2 Chr:7q32.2
    418 211527_x_atVEGF Chr:6p12
    517 210513_s_atVEGF Chr:6p12
    616 210512_s_atVEGF Chr:6p12
    719 212171_x_atVEGF Chr:6p12
    81 1553392_atFLJ25818 Chr:17q24.1
    922 218149_s_atZNF395 Chr:8p21.1
    1031 232693_s_atZNF395 Chr:8p21.1
    1129 223216_x_atZNF395 Chr:8p21.1
    1227 221123_x_atZNF395 Chr:8p21.1
    1332 242517_atGPR54 Chr:19p13.3
    1413 203438_atSTC2 Chr:5q35.2
    1520 212775_atKIAA0657 Chr:2q36.1
    1624 219410_atFLJ10134 Chr:3q12.3
    174 200737_atPGK1 Chr:xq13
    1828 222646_s_atERO1L Chr:14q22.1
    1930 226452_atPDK1 Chr:2q31.1
    2012 203282_atGBE1 Chr:3p12.3
    2110 202934_atHK2 Chr:2p13
    227 202627_s_atSERPINE1 Chr:7q21.3-q22
    2311 203108_atRAI3 Chr:12p13-p12.3
    245 201169_s_atBHLHB2 Chr:3p26
    256 202497_x_atSLC2A3 Chr:12p13.3
    268 202859_x_atIL8 Chr:4q13-q21
    2715 209122_atADFP Chr:9p22.1-p21.3
    2825 219434_atTREM1 Chr:6p21.1
    2914 204298_s_atLOX Chr:5q23.2
    3021 215446_s_at--- ---
    313 200632_s_atNDRG1 Chr:8q24.3
    3226 221009_s_atANGPTL4 Chr:19p13.3

    Samples Names

    12104.cel
    281317.cel
    3412.cel
    43106.cel
    5111430.cel
    653547.cel
    758574.cel
    86129.cel
    930269.cel
    10101399.cel
    116070.cel
    12151497R.cel
    1331274.cel
    1418157.cel
    1542356bis.cel
    16221854R.cel
    176694bis.cel
    186490.cel
    19121437.cel
    2071308.cel
    2123190.cel
    2232283.cel
    231100R.cel
    2440345.cel
    251615.cel
    266180.cel
    2736300.cel
    286593.cel
    2928246.cel
    3029254.cel
    3126236.cel
    3234288.cel
    3346428.cel
    3417155R.cel
    3543360.cel
    3656566.cel
    37131453.cel
    38201621.cel
    3933284.cel
    4038328.cel
    4191360.cel
    4241349.cel
    43211622R.cel
    4424218.cel
    4547444.cel
    4627242.cel
    4744390.cel
    4850506.cel
    4951527.cel
    5055563.cel
    5119159.cel
    523530.cel
    5369ge205.cel
    5448458.cel
    5554558.cel
    5639344.cel
    5749461.cel
    586283.cel
    5914147.cel
    6025222.cel
    6151284.cel
    6245396.cel
    635757.cel
    646797.cel
    6537323.cel
    665965R.cel
    676384.cel
    6868ge197.cel
    6952528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)6
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 01:09:31