G9_using_S3

Super-paramagnetic Clustering of 32 points in a 4 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=13)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    110 202934_atHK2 Chr:2p13
    211 203108_atRAI3 Chr:12p13-p12.3
    31 1553392_atFLJ25818 Chr:17q24.1
    419 212171_x_atVEGF Chr:6p12
    525 219434_atTREM1 Chr:6p21.1
    612 203282_atGBE1 Chr:3p12.3
    732 242517_atGPR54 Chr:19p13.3
    82 1554452_a_atHIG2 Chr:7q32.2
    914 204298_s_atLOX Chr:5q23.2
    1017 210513_s_atVEGF Chr:6p12
    1130 226452_atPDK1 Chr:2q31.1
    124 200737_atPGK1 Chr:xq13
    137 202627_s_atSERPINE1 Chr:7q21.3-q22
    1413 203438_atSTC2 Chr:5q35.2
    156 202497_x_atSLC2A3 Chr:12p13.3
    1615 209122_atADFP Chr:9p22.1-p21.3
    1728 222646_s_atERO1L Chr:14q22.1
    188 202859_x_atIL8 Chr:4q13-q21
    1920 212775_atKIAA0657 Chr:2q36.1
    2022 218149_s_atZNF395 Chr:8p21.1
    219 202912_atADM Chr:11p15.4
    2226 221009_s_atANGPTL4 Chr:19p13.3
    2331 232693_s_atZNF395 Chr:8p21.1
    245 201169_s_atBHLHB2 Chr:3p26
    2527 221123_x_atZNF395 Chr:8p21.1
    263 200632_s_atNDRG1 Chr:8q24.3
    2724 219410_atFLJ10134 Chr:3q12.3
    2829 223216_x_atZNF395 Chr:8p21.1
    2923 218507_atHIG2 Chr:7q32.2
    3016 210512_s_atVEGF Chr:6p12
    3118 211527_x_atVEGF Chr:6p12
    3221 215446_s_at--- ---

    Samples Names

    12148.cel
    231553.cel
    311076.cel
    441780.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)13
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 01:08:44