G9_using_S1

Super-paramagnetic Clustering of 32 points in a 84 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=6)

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    125 219434_atTREM1 Chr:6p21.1
    214 204298_s_atLOX Chr:5q23.2
    321 215446_s_at--- ---
    49 202912_atADM Chr:11p15.4
    518 211527_x_atVEGF Chr:6p12
    617 210513_s_atVEGF Chr:6p12
    719 212171_x_atVEGF Chr:6p12
    816 210512_s_atVEGF Chr:6p12
    923 218507_atHIG2 Chr:7q32.2
    102 1554452_a_atHIG2 Chr:7q32.2
    1111 203108_atRAI3 Chr:12p13-p12.3
    125 201169_s_atBHLHB2 Chr:3p26
    137 202627_s_atSERPINE1 Chr:7q21.3-q22
    1422 218149_s_atZNF395 Chr:8p21.1
    1531 232693_s_atZNF395 Chr:8p21.1
    1627 221123_x_atZNF395 Chr:8p21.1
    1729 223216_x_atZNF395 Chr:8p21.1
    1820 212775_atKIAA0657 Chr:2q36.1
    191 1553392_atFLJ25818 Chr:17q24.1
    2013 203438_atSTC2 Chr:5q35.2
    2132 242517_atGPR54 Chr:19p13.3
    2228 222646_s_atERO1L Chr:14q22.1
    234 200737_atPGK1 Chr:xq13
    2430 226452_atPDK1 Chr:2q31.1
    253 200632_s_atNDRG1 Chr:8q24.3
    2626 221009_s_atANGPTL4 Chr:19p13.3
    276 202497_x_atSLC2A3 Chr:12p13.3
    288 202859_x_atIL8 Chr:4q13-q21
    2915 209122_atADFP Chr:9p22.1-p21.3
    3010 202934_atHK2 Chr:2p13
    3112 203282_atGBE1 Chr:3p12.3
    3224 219410_atFLJ10134 Chr:3q12.3

    Samples Names

    125161.cel
    233211.cel
    3111357.cel
    4291795R.cel
    5311869RR.cel
    66655.cel
    718148.cel
    8211553.cel
    941076.cel
    10281780.cel
    112104.cel
    12101317.cel
    13512.cel
    143106.cel
    15141430.cel
    1665547.cel
    1771574.cel
    187129.cel
    1941269.cel
    20131399.cel
    217570.cel
    22191497R.cel
    2342274.cel
    2423157.cel
    2553356bis.cel
    26301854R.cel
    278194bis.cel
    287990.cel
    29151437.cel
    3091308.cel
    3132190.cel
    3243283.cel
    331100R.cel
    3451345.cel
    352015.cel
    367680.cel
    3747300.cel
    388093.cel
    3939246.cel
    4040254.cel
    4137236.cel
    4245288.cel
    4357428.cel
    4422155R.cel
    4554360.cel
    4669566.cel
    47161453.cel
    48261621.cel
    4944284.cel
    5049328.cel
    51121360.cel
    5252349.cel
    53271622R.cel
    5435218.cel
    5558444.cel
    5638242.cel
    5755390.cel
    5861506.cel
    5962527.cel
    6068563.cel
    6124159.cel
    624630.cel
    6384ge205.cel
    6459458.cel
    6567558.cel
    6650344.cel
    6760461.cel
    687783.cel
    6917147.cel
    7036222.cel
    7161284.cel
    7256396.cel
    737057.cel
    748297.cel
    7548323.cel
    767465R.cel
    777884.cel
    7883ge197.cel
    7963528bis.cel
    807363.cel
    8181297.cel
    8264534.cel
    8334212R.cel
    847257R.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)6
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 01:07:08