G8_using_S6

Super-paramagnetic Clustering of 91 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		1552386_at	FLJ33641 Chr:5q12.1
2	80		227265_at	--- ---
3	25		204150_at	STAB1 Chr:3p21.31
4	91		38487_at	STAB1 Chr:3p21.31
5	55		213537_at	HLA-DPA1 Chr:6p21.3
6	50		211990_at	HLA-DPA1 Chr:6p21.3
7	47		211654_x_at	HLA-DQB1 Chr:6p21.3
8	54		212998_x_at	HLA-DQB1 Chr:6p21.3
9	46		211429_s_at	--- ---
10	14		202833_s_at	SERPINA1 Chr:14q32.1
11	35		206111_at	RNASE2 Chr:14q24-q31
12	61		216950_s_at	FCGR1A Chr:1q21.2-q21.3
13	58		214511_x_at	FCGR1A Chr:1q21.2-q21.3
14	39		208894_at	HLA-DRA Chr:6p21.3
15	53		212671_s_at	HLA-DQA1 Chr:6p21.3
16	45		210982_s_at	HLA-DRA Chr:6p21.3
17	38		208306_x_at	HLA-DRB3 Chr:6p21.3
18	40		209312_x_at	HLA-DRB1 Chr:6p21.3
19	60		215193_x_at	HLA-DRB3 Chr:6p21.3
20	29		204670_x_at	HLA-DRB3 Chr:6p21.3
21	51		211991_s_at	HLA-DPA1 Chr:6p21.3
22	7		201137_s_at	HLA-DPB1 Chr:6p21.3
23	41		209619_at	CD74 Chr:5q32
24	63		217478_s_at	HLA-DMA Chr:6p21.3
25	42		209823_x_at	HLA-DQB1 Chr:6p21.3
26	48		211656_x_at	HLA-DQB1 Chr:6p21.3
27	12	G220 G221 G222	202546_at	VAMP8 Chr:2p12-p11.2
28	37	G220 G221 G222	208018_s_at	HCK Chr:20q11-q12
29	4	G220 G221 G222	1554899_s_at	FCER1G Chr:1q23
30	8	G220 G221 G222	201422_at	IFI30 Chr:19p13.1
31	27	G220 G221 G222	204232_at	FCER1G Chr:1q23
32	67	G220 G221 G222	219386_s_at	SLAMF8 Chr:1q23.1
33	62	G220 G221 G222	217388_s_at	KYNU Chr:2q22.3
34	26	G220 G221 G222	204174_at	ALOX5AP Chr:13q12
35	86	G220 G221 G222	229937_x_at	LILRB1 Chr:19q13.4
36	10	G220 G221 G222	201721_s_at	LAPTM5 Chr:1p34
37	5	G220 G221 G222	1555349_a_at	ITGB2 Chr:21q22.3
38	13	G220 G221 G222	202803_s_at	ITGB2 Chr:21q22.3
39	18	G220 G221 G222	202957_at	HCLS1 Chr:3q13
40	20	G220 G221 G222	203416_at	CD53 Chr:1p13
41	64	G220 G221 G222	217983_s_at	RNASET2 Chr:6q27
42	15	G220 G221 G222	202901_x_at	CTSS Chr:1q21
43	16	G220 G221 G222	202902_s_at	CTSS Chr:1q21
44	44	G220 G221 G222	210314_x_at	TNFSF13 Chr:17p13.1
45	89	G220 G221 G222	232617_at	CTSS Chr:1q21
46	52	G220 G221 G222	212588_at	PTPRC Chr:1q31-q32
47	24	G220 G221 G222	204122_at	TYROBP Chr:19q13.1
48	59	G220 G221 G222	214770_at	MSR1 Chr:8p22
49	84	G220 G221 G222	229560_at	TLR8 Chr:xp22
50	65	G221 G222	218232_at	C1QA Chr:1p36.3-p34.1
51	17	G221 G222	202953_at	C1QB Chr:1p36.3-p34.1
52	77	G221 G222	225353_s_at	C1QG Chr:1p36.11
53	81	G222	227266_s_at	FYB Chr:5p13.1
54	74	G222	223343_at	MS4A7 Chr:11q12
55	71	G222	220330_s_at	SAMSN1 Chr:21q11
56	11	G222	201743_at	CD14 Chr:5q31.1
57	30	G222	204787_at	Z39IG Chr:xq12-q13.3
58	3	G222	1552807_a_at	SIGLEC10 Chr:19q13.3
59	19	G222	203104_at	CSF1R Chr:5q33-q35
60	6	G219	1555728_a_at	MS4A4A Chr:11q12
61	1	G219	1552316_a_at	IMAP1 Chr:7q36.1
62	69	G219	219666_at	MS4A6A Chr:11q12.1
63	88	G219	230550_at	MS4A6A Chr:11q12.1
64	66	G219	218854_at	SART2 Chr:6q22
65	73	G219	223280_x_at	MS4A6A Chr:11q12.1
66	76	G219	224356_x_at	MS4A6A Chr:11q12.1
67	23	G219	204007_at	FCGR3A Chr:1q23
68	31	G219	204959_at	MNDA Chr:1q22
69	68	G219	219607_s_at	MS4A4A Chr:11q12
70	9	G219	201487_at	CTSC Chr:11q14.1-q14.3
71	22	G219	204006_s_at	FCGR3A Chr:1q23
72	43	G219	210176_at	TLR1 Chr:4p14
73	57	G219	214467_at	GPR65 Chr:14q31-q32.1
74	36	G219	206584_at	LY96 Chr:8q13.3
75	70		220146_at	TLR7 Chr:xp22.3
76	32		204971_at	CSTA Chr:3q21
77	83		228532_at	MGC24133 Chr:1p13.2
78	56		213566_at	RNASE6 Chr:14q11.2
79	21		203561_at	FCGR2A Chr:1q23
80	28		204446_s_at	ALOX5 Chr:10q11.2
81	33		205786_s_at	ITGAM Chr:16p11.2
82	79		226068_at	SYK Chr:9q22
83	82		227346_at	ZNFN1A1 Chr:7p13-p11.1
84	87		230391_at	--- ---
85	75		223620_at	GPR34 Chr:xp11.4-p11.3
86	34		205997_at	ADAM28 Chr:8p21.2
87	85		229723_at	TAGAP Chr:6q25.3
88	49		211742_s_at	EVI2B Chr:17q11.2
89	72		221698_s_at	CLECSF12 Chr:12p13.2-p12.3
90	90		232843_s_at	DOCK8 Chr:9p24.3
91	78		225502_at	DOCK8 Chr:9p24.3

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:06:20

G8_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC