G8_using_S4

Super-paramagnetic Clustering of 91 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		1552386_at	FLJ33641 Chr:5q12.1
2	80		227265_at	--- ---
3	55		213537_at	HLA-DPA1 Chr:6p21.3
4	50		211990_at	HLA-DPA1 Chr:6p21.3
5	46		211429_s_at	--- ---
6	14		202833_s_at	SERPINA1 Chr:14q32.1
7	25		204150_at	STAB1 Chr:3p21.31
8	91		38487_at	STAB1 Chr:3p21.31
9	28		204446_s_at	ALOX5 Chr:10q11.2
10	33		205786_s_at	ITGAM Chr:16p11.2
11	79		226068_at	SYK Chr:9q22
12	42		209823_x_at	HLA-DQB1 Chr:6p21.3
13	48		211656_x_at	HLA-DQB1 Chr:6p21.3
14	47	G215	211654_x_at	HLA-DQB1 Chr:6p21.3
15	54	G215	212998_x_at	HLA-DQB1 Chr:6p21.3
16	61	G215	216950_s_at	FCGR1A Chr:1q21.2-q21.3
17	58	G215	214511_x_at	FCGR1A Chr:1q21.2-q21.3
18	86	G215	229937_x_at	LILRB1 Chr:19q13.4
19	19	G215	203104_at	CSF1R Chr:5q33-q35
20	3	G214 G215	1552807_a_at	SIGLEC10 Chr:19q13.3
21	10	G214 G215	201721_s_at	LAPTM5 Chr:1p34
22	5	G214 G215	1555349_a_at	ITGB2 Chr:21q22.3
23	13	G214 G215	202803_s_at	ITGB2 Chr:21q22.3
24	11	G214 G215	201743_at	CD14 Chr:5q31.1
25	8	G214 G215	201422_at	IFI30 Chr:19p13.1
26	67	G214 G215	219386_s_at	SLAMF8 Chr:1q23.1
27	12	G214 G215	202546_at	VAMP8 Chr:2p12-p11.2
28	62	G214 G215	217388_s_at	KYNU Chr:2q22.3
29	4	G214 G215	1554899_s_at	FCER1G Chr:1q23
30	27	G214 G215	204232_at	FCER1G Chr:1q23
31	37	G214 G215	208018_s_at	HCK Chr:20q11-q12
32	30	G214 G215	204787_at	Z39IG Chr:xq12-q13.3
33	17	G214 G215	202953_at	C1QB Chr:1p36.3-p34.1
34	65	G214 G215	218232_at	C1QA Chr:1p36.3-p34.1
35	77	G214 G215	225353_s_at	C1QG Chr:1p36.11
36	15	G214 G215	202901_x_at	CTSS Chr:1q21
37	16	G214 G215	202902_s_at	CTSS Chr:1q21
38	18	G214 G215	202957_at	HCLS1 Chr:3q13
39	20	G214 G215	203416_at	CD53 Chr:1p13
40	56	G214 G215	213566_at	RNASE6 Chr:14q11.2
41	24	G214 G215	204122_at	TYROBP Chr:19q13.1
42	59	G214 G215	214770_at	MSR1 Chr:8p22
43	52	G214 G215	212588_at	PTPRC Chr:1q31-q32
44	26	G214 G215	204174_at	ALOX5AP Chr:13q12
45	84	G214 G215	229560_at	TLR8 Chr:xp22
46	89	G214 G215	232617_at	CTSS Chr:1q21
47	6	G213 G215	1555728_a_at	MS4A4A Chr:11q12
48	21	G213 G215	203561_at	FCGR2A Chr:1q23
49	22	G213 G215	204006_s_at	FCGR3A Chr:1q23
50	1	G213 G215	1552316_a_at	IMAP1 Chr:7q36.1
51	69	G213 G215	219666_at	MS4A6A Chr:11q12.1
52	88	G213 G215	230550_at	MS4A6A Chr:11q12.1
53	73	G213 G215	223280_x_at	MS4A6A Chr:11q12.1
54	76	G213 G215	224356_x_at	MS4A6A Chr:11q12.1
55	66	G213 G215	218854_at	SART2 Chr:6q22
56	23	G213 G215	204007_at	FCGR3A Chr:1q23
57	31	G213 G215	204959_at	MNDA Chr:1q22
58	43	G213 G215	210176_at	TLR1 Chr:4p14
59	68	G213 G215	219607_s_at	MS4A4A Chr:11q12
60	57	G213 G215	214467_at	GPR65 Chr:14q31-q32.1
61	63	G213 G215	217478_s_at	HLA-DMA Chr:6p21.3
62	44	G215	210314_x_at	TNFSF13 Chr:17p13.1
63	38	G215	208306_x_at	HLA-DRB3 Chr:6p21.3
64	7	G215	201137_s_at	HLA-DPB1 Chr:6p21.3
65	29	G215	204670_x_at	HLA-DRB3 Chr:6p21.3
66	40	G215	209312_x_at	HLA-DRB1 Chr:6p21.3
67	51	G215	211991_s_at	HLA-DPA1 Chr:6p21.3
68	41	G215	209619_at	CD74 Chr:5q32
69	60	G215	215193_x_at	HLA-DRB3 Chr:6p21.3
70	39	G215	208894_at	HLA-DRA Chr:6p21.3
71	45	G215	210982_s_at	HLA-DRA Chr:6p21.3
72	53	G215	212671_s_at	HLA-DQA1 Chr:6p21.3
73	64	G215	217983_s_at	RNASET2 Chr:6q27
74	35	G215	206111_at	RNASE2 Chr:14q24-q31
75	70	G215	220146_at	TLR7 Chr:xp22.3
76	71	G215	220330_s_at	SAMSN1 Chr:21q11
77	32	G215	204971_at	CSTA Chr:3q21
78	83	G215	228532_at	MGC24133 Chr:1p13.2
79	72		221698_s_at	CLECSF12 Chr:12p13.2-p12.3
80	90		232843_s_at	DOCK8 Chr:9p24.3
81	78		225502_at	DOCK8 Chr:9p24.3
82	34		205997_at	ADAM28 Chr:8p21.2
83	49		211742_s_at	EVI2B Chr:17q11.2
84	85		229723_at	TAGAP Chr:6q25.3
85	75		223620_at	GPR34 Chr:xp11.4-p11.3
86	87		230391_at	--- ---
87	74		223343_at	MS4A7 Chr:11q12
88	81		227266_s_at	FYB Chr:5p13.1
89	82		227346_at	ZNFN1A1 Chr:7p13-p11.1
90	9		201487_at	CTSC Chr:11q14.1-q14.3
91	36		206584_at	LY96 Chr:8q13.3

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:03:02

G8_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC