G8_using_S3

Super-paramagnetic Clustering of 91 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	19		203104_at	CSF1R Chr:5q33-q35
2	56		213566_at	RNASE6 Chr:14q11.2
3	44		210314_x_at	TNFSF13 Chr:17p13.1
4	20		203416_at	CD53 Chr:1p13
5	72		221698_s_at	CLECSF12 Chr:12p13.2-p12.3
6	12		202546_at	VAMP8 Chr:2p12-p11.2
7	8		201422_at	IFI30 Chr:19p13.1
8	32		204971_at	CSTA Chr:3q21
9	53		212671_s_at	HLA-DQA1 Chr:6p21.3
10	35	G212	206111_at	RNASE2 Chr:14q24-q31
11	30	G212	204787_at	Z39IG Chr:xq12-q13.3
12	23	G212	204007_at	FCGR3A Chr:1q23
13	83	G212	228532_at	MGC24133 Chr:1p13.2
14	27	G212	204232_at	FCER1G Chr:1q23
15	14	G209 G212	202833_s_at	SERPINA1 Chr:14q32.1
16	22	G209 G212	204006_s_at	FCGR3A Chr:1q23
17	11	G209 G212	201743_at	CD14 Chr:5q31.1
18	61	G209 G212	216950_s_at	FCGR1A Chr:1q21.2-q21.3
19	6	G209 G212	1555728_a_at	MS4A4A Chr:11q12
20	4	G209 G212	1554899_s_at	FCER1G Chr:1q23
21	25	G209 G212	204150_at	STAB1 Chr:3p21.31
22	43	G209 G212	210176_at	TLR1 Chr:4p14
23	58	G209 G212	214511_x_at	FCGR1A Chr:1q21.2-q21.3
24	68	G209 G212	219607_s_at	MS4A4A Chr:11q12
25	5	G209 G212	1555349_a_at	ITGB2 Chr:21q22.3
26	28	G209 G212	204446_s_at	ALOX5 Chr:10q11.2
27	3	G209 G212	1552807_a_at	SIGLEC10 Chr:19q13.3
28	37	G209 G212	208018_s_at	HCK Chr:20q11-q12
29	62	G209 G212	217388_s_at	KYNU Chr:2q22.3
30	17	G209 G212	202953_at	C1QB Chr:1p36.3-p34.1
31	70	G209 G212	220146_at	TLR7 Chr:xp22.3
32	86	G209 G212	229937_x_at	LILRB1 Chr:19q13.4
33	66	G209 G212	218854_at	SART2 Chr:6q22
34	91	G209 G212	38487_at	STAB1 Chr:3p21.31
35	31	G209 G212	204959_at	MNDA Chr:1q22
36	18	G209 G212	202957_at	HCLS1 Chr:3q13
37	65	G209 G212	218232_at	C1QA Chr:1p36.3-p34.1
38	9	G210 G212	201487_at	CTSC Chr:11q14.1-q14.3
39	24	G210 G212	204122_at	TYROBP Chr:19q13.1
40	13	G210 G212	202803_s_at	ITGB2 Chr:21q22.3
41	26	G210 G212	204174_at	ALOX5AP Chr:13q12
42	39	G210 G212	208894_at	HLA-DRA Chr:6p21.3
43	10	G210 G212	201721_s_at	LAPTM5 Chr:1p34
44	21	G210 G212	203561_at	FCGR2A Chr:1q23
45	80	G210 G212	227265_at	--- ---
46	64	G210 G212	217983_s_at	RNASET2 Chr:6q27
47	41	G210 G212	209619_at	CD74 Chr:5q32
48	38	G210 G212	208306_x_at	HLA-DRB3 Chr:6p21.3
49	51	G210 G212	211991_s_at	HLA-DPA1 Chr:6p21.3
50	78	G210 G212	225502_at	DOCK8 Chr:9p24.3
51	40	G210 G212	209312_x_at	HLA-DRB1 Chr:6p21.3
52	79	G210 G212	226068_at	SYK Chr:9q22
53	89	G210 G212	232617_at	CTSS Chr:1q21
54	45	G210 G212	210982_s_at	HLA-DRA Chr:6p21.3
55	60	G210 G212	215193_x_at	HLA-DRB3 Chr:6p21.3
56	63	G210 G212	217478_s_at	HLA-DMA Chr:6p21.3
57	7	G210 G212	201137_s_at	HLA-DPB1 Chr:6p21.3
58	74	G210 G212	223343_at	MS4A7 Chr:11q12
59	29	G210 G212	204670_x_at	HLA-DRB3 Chr:6p21.3
60	90	G210 G212	232843_s_at	DOCK8 Chr:9p24.3
61	52	G211 G212	212588_at	PTPRC Chr:1q31-q32
62	16	G211 G212	202902_s_at	CTSS Chr:1q21
63	15	G211 G212	202901_x_at	CTSS Chr:1q21
64	59	G211 G212	214770_at	MSR1 Chr:8p22
65	87	G211 G212	230391_at	--- ---
66	77	G211 G212	225353_s_at	C1QG Chr:1p36.11
67	46	G211 G212	211429_s_at	--- ---
68	81	G211 G212	227266_s_at	FYB Chr:5p13.1
69	69	G211 G212	219666_at	MS4A6A Chr:11q12.1
70	82	G211 G212	227346_at	ZNFN1A1 Chr:7p13-p11.1
71	33	G211 G212	205786_s_at	ITGAM Chr:16p11.2
72	73	G211 G212	223280_x_at	MS4A6A Chr:11q12.1
73	36	G211 G212	206584_at	LY96 Chr:8q13.3
74	76	G211 G212	224356_x_at	MS4A6A Chr:11q12.1
75	88	G211 G212	230550_at	MS4A6A Chr:11q12.1
76	57	G212	214467_at	GPR65 Chr:14q31-q32.1
77	49	G212	211742_s_at	EVI2B Chr:17q11.2
78	84	G212	229560_at	TLR8 Chr:xp22
79	2		1552386_at	FLJ33641 Chr:5q12.1
80	1		1552316_a_at	IMAP1 Chr:7q36.1
81	71		220330_s_at	SAMSN1 Chr:21q11
82	67		219386_s_at	SLAMF8 Chr:1q23.1
83	34		205997_at	ADAM28 Chr:8p21.2
84	47		211654_x_at	HLA-DQB1 Chr:6p21.3
85	50		211990_at	HLA-DPA1 Chr:6p21.3
86	54		212998_x_at	HLA-DQB1 Chr:6p21.3
87	42		209823_x_at	HLA-DQB1 Chr:6p21.3
88	48		211656_x_at	HLA-DQB1 Chr:6p21.3
89	75		223620_at	GPR34 Chr:xp11.4-p11.3
90	55		213537_at	HLA-DPA1 Chr:6p21.3
91	85		229723_at	TAGAP Chr:6q25.3

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 01:01:29

G8_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC