G8_using_S2

Super-paramagnetic Clustering of 91 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=25)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	26		204174_at	ALOX5AP Chr:13q12
2	36		206584_at	LY96 Chr:8q13.3
3	9		201487_at	CTSC Chr:11q14.1-q14.3
4	34		205997_at	ADAM28 Chr:8p21.2
5	44		210314_x_at	TNFSF13 Chr:17p13.1
6	14		202833_s_at	SERPINA1 Chr:14q32.1
7	11		201743_at	CD14 Chr:5q31.1
8	30		204787_at	Z39IG Chr:xq12-q13.3
9	43		210176_at	TLR1 Chr:4p14
10	64		217983_s_at	RNASET2 Chr:6q27
11	2	G208	1552386_at	FLJ33641 Chr:5q12.1
12	21	G208	203561_at	FCGR2A Chr:1q23
13	24	G208	204122_at	TYROBP Chr:19q13.1
14	5	G208	1555349_a_at	ITGB2 Chr:21q22.3
15	17	G208	202953_at	C1QB Chr:1p36.3-p34.1
16	28	G208	204446_s_at	ALOX5 Chr:10q11.2
17	13	G208	202803_s_at	ITGB2 Chr:21q22.3
18	20	G208	203416_at	CD53 Chr:1p13
19	22	G208	204006_s_at	FCGR3A Chr:1q23
20	23	G208	204007_at	FCGR3A Chr:1q23
21	16	G208	202902_s_at	CTSS Chr:1q21
22	18	G208	202957_at	HCLS1 Chr:3q13
23	31	G208	204959_at	MNDA Chr:1q22
24	33	G208	205786_s_at	ITGAM Chr:16p11.2
25	37	G208	208018_s_at	HCK Chr:20q11-q12
26	25	G208	204150_at	STAB1 Chr:3p21.31
27	27	G208	204232_at	FCER1G Chr:1q23
28	35	G208	206111_at	RNASE2 Chr:14q24-q31
29	65	G208	218232_at	C1QA Chr:1p36.3-p34.1
30	12	G208	202546_at	VAMP8 Chr:2p12-p11.2
31	10	G208	201721_s_at	LAPTM5 Chr:1p34
32	41	G208	209619_at	CD74 Chr:5q32
33	52	G208	212588_at	PTPRC Chr:1q31-q32
34	81	G208	227266_s_at	FYB Chr:5p13.1
35	74	G208	223343_at	MS4A7 Chr:11q12
36	45	G208	210982_s_at	HLA-DRA Chr:6p21.3
37	40	G208	209312_x_at	HLA-DRB1 Chr:6p21.3
38	50	G208	211990_at	HLA-DPA1 Chr:6p21.3
39	77	G208	225353_s_at	C1QG Chr:1p36.11
40	39	G208	208894_at	HLA-DRA Chr:6p21.3
41	60	G208	215193_x_at	HLA-DRB3 Chr:6p21.3
42	62	G208	217388_s_at	KYNU Chr:2q22.3
43	6	G208	1555728_a_at	MS4A4A Chr:11q12
44	7	G208	201137_s_at	HLA-DPB1 Chr:6p21.3
45	29	G208	204670_x_at	HLA-DRB3 Chr:6p21.3
46	68	G208	219607_s_at	MS4A4A Chr:11q12
47	51	G208	211991_s_at	HLA-DPA1 Chr:6p21.3
48	55	G208	213537_at	HLA-DPA1 Chr:6p21.3
49	3	G208	1552807_a_at	SIGLEC10 Chr:19q13.3
50	80	G208	227265_at	--- ---
51	4	G208	1554899_s_at	FCER1G Chr:1q23
52	66	G208	218854_at	SART2 Chr:6q22
53	46	G208	211429_s_at	--- ---
54	57	G208	214467_at	GPR65 Chr:14q31-q32.1
55	71	G208	220330_s_at	SAMSN1 Chr:21q11
56	72	G208	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
57	19	G208	203104_at	CSF1R Chr:5q33-q35
58	38	G208	208306_x_at	HLA-DRB3 Chr:6p21.3
59	56	G208	213566_at	RNASE6 Chr:14q11.2
60	63	G208	217478_s_at	HLA-DMA Chr:6p21.3
61	75	G208	223620_at	GPR34 Chr:xp11.4-p11.3
62	73	G208	223280_x_at	MS4A6A Chr:11q12.1
63	76	G208	224356_x_at	MS4A6A Chr:11q12.1
64	83	G208	228532_at	MGC24133 Chr:1p13.2
65	78	G208	225502_at	DOCK8 Chr:9p24.3
66	86	G208	229937_x_at	LILRB1 Chr:19q13.4
67	82	G208	227346_at	ZNFN1A1 Chr:7p13-p11.1
68	90	G208	232843_s_at	DOCK8 Chr:9p24.3
69	15	G208	202901_x_at	CTSS Chr:1q21
70	85	G208	229723_at	TAGAP Chr:6q25.3
71	89	G208	232617_at	CTSS Chr:1q21
72	42	G208	209823_x_at	HLA-DQB1 Chr:6p21.3
73	49	G208	211742_s_at	EVI2B Chr:17q11.2
74	84	G208	229560_at	TLR8 Chr:xp22
75	88		230550_at	MS4A6A Chr:11q12.1
76	58		214511_x_at	FCGR1A Chr:1q21.2-q21.3
77	61		216950_s_at	FCGR1A Chr:1q21.2-q21.3
78	70		220146_at	TLR7 Chr:xp22.3
79	79		226068_at	SYK Chr:9q22
80	87		230391_at	--- ---
81	53		212671_s_at	HLA-DQA1 Chr:6p21.3
82	32		204971_at	CSTA Chr:3q21
83	59		214770_at	MSR1 Chr:8p22
84	1		1552316_a_at	IMAP1 Chr:7q36.1
85	69		219666_at	MS4A6A Chr:11q12.1
86	8		201422_at	IFI30 Chr:19p13.1
87	91		38487_at	STAB1 Chr:3p21.31
88	48		211656_x_at	HLA-DQB1 Chr:6p21.3
89	47		211654_x_at	HLA-DQB1 Chr:6p21.3
90	54		212998_x_at	HLA-DQB1 Chr:6p21.3
91	67		219386_s_at	SLAMF8 Chr:1q23.1

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	25
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:59:56

G8_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=25)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC