G8_using_S1

Super-paramagnetic Clustering of 91 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		1552386_at	FLJ33641 Chr:5q12.1
2	80		227265_at	--- ---
3	71		220330_s_at	SAMSN1 Chr:21q11
4	81		227266_s_at	FYB Chr:5p13.1
5	74		223343_at	MS4A7 Chr:11q12
6	46		211429_s_at	--- ---
7	14		202833_s_at	SERPINA1 Chr:14q32.1
8	21		203561_at	FCGR2A Chr:1q23
9	56		213566_at	RNASE6 Chr:14q11.2
10	83		228532_at	MGC24133 Chr:1p13.2
11	15		202901_x_at	CTSS Chr:1q21
12	16		202902_s_at	CTSS Chr:1q21
13	44		210314_x_at	TNFSF13 Chr:17p13.1
14	89		232617_at	CTSS Chr:1q21
15	53		212671_s_at	HLA-DQA1 Chr:6p21.3
16	39		208894_at	HLA-DRA Chr:6p21.3
17	38		208306_x_at	HLA-DRB3 Chr:6p21.3
18	45		210982_s_at	HLA-DRA Chr:6p21.3
19	40		209312_x_at	HLA-DRB1 Chr:6p21.3
20	60		215193_x_at	HLA-DRB3 Chr:6p21.3
21	29		204670_x_at	HLA-DRB3 Chr:6p21.3
22	51		211991_s_at	HLA-DPA1 Chr:6p21.3
23	41		209619_at	CD74 Chr:5q32
24	63		217478_s_at	HLA-DMA Chr:6p21.3
25	7		201137_s_at	HLA-DPB1 Chr:6p21.3
26	6	G205	1555728_a_at	MS4A4A Chr:11q12
27	36	G205	206584_at	LY96 Chr:8q13.3
28	68	G205	219607_s_at	MS4A4A Chr:11q12
29	9	G205	201487_at	CTSC Chr:11q14.1-q14.3
30	66	G205	218854_at	SART2 Chr:6q22
31	73	G205	223280_x_at	MS4A6A Chr:11q12.1
32	76	G205	224356_x_at	MS4A6A Chr:11q12.1
33	1	G205	1552316_a_at	IMAP1 Chr:7q36.1
34	69	G205	219666_at	MS4A6A Chr:11q12.1
35	88	G205	230550_at	MS4A6A Chr:11q12.1
36	23	G205	204007_at	FCGR3A Chr:1q23
37	22	G205	204006_s_at	FCGR3A Chr:1q23
38	31	G205	204959_at	MNDA Chr:1q22
39	43	G205	210176_at	TLR1 Chr:4p14
40	57	G205	214467_at	GPR65 Chr:14q31-q32.1
41	85		229723_at	TAGAP Chr:6q25.3
42	75		223620_at	GPR34 Chr:xp11.4-p11.3
43	49		211742_s_at	EVI2B Chr:17q11.2
44	34		205997_at	ADAM28 Chr:8p21.2
45	5	G206 G207	1555349_a_at	ITGB2 Chr:21q22.3
46	26	G206 G207	204174_at	ALOX5AP Chr:13q12
47	13	G206 G207	202803_s_at	ITGB2 Chr:21q22.3
48	8	G206 G207	201422_at	IFI30 Chr:19p13.1
49	67	G206 G207	219386_s_at	SLAMF8 Chr:1q23.1
50	62	G206 G207	217388_s_at	KYNU Chr:2q22.3
51	35	G206 G207	206111_at	RNASE2 Chr:14q24-q31
52	4	G206 G207	1554899_s_at	FCER1G Chr:1q23
53	27	G206 G207	204232_at	FCER1G Chr:1q23
54	3	G206 G207	1552807_a_at	SIGLEC10 Chr:19q13.3
55	18	G206 G207	202957_at	HCLS1 Chr:3q13
56	20	G206 G207	203416_at	CD53 Chr:1p13
57	64	G206 G207	217983_s_at	RNASET2 Chr:6q27
58	24	G206 G207	204122_at	TYROBP Chr:19q13.1
59	84	G206 G207	229560_at	TLR8 Chr:xp22
60	52	G206 G207	212588_at	PTPRC Chr:1q31-q32
61	59	G206 G207	214770_at	MSR1 Chr:8p22
62	28	G206 G207	204446_s_at	ALOX5 Chr:10q11.2
63	12	G206 G207	202546_at	VAMP8 Chr:2p12-p11.2
64	10	G206 G207	201721_s_at	LAPTM5 Chr:1p34
65	72	G206 G207	221698_s_at	CLECSF12 Chr:12p13.2-p12.3
66	33	G206 G207	205786_s_at	ITGAM Chr:16p11.2
67	79	G206 G207	226068_at	SYK Chr:9q22
68	37	G206 G207	208018_s_at	HCK Chr:20q11-q12
69	86	G206 G207	229937_x_at	LILRB1 Chr:19q13.4
70	19	G206 G207	203104_at	CSF1R Chr:5q33-q35
71	17	G207	202953_at	C1QB Chr:1p36.3-p34.1
72	65	G207	218232_at	C1QA Chr:1p36.3-p34.1
73	77	G207	225353_s_at	C1QG Chr:1p36.11
74	11	G207	201743_at	CD14 Chr:5q31.1
75	30	G207	204787_at	Z39IG Chr:xq12-q13.3
76	61		216950_s_at	FCGR1A Chr:1q21.2-q21.3
77	58		214511_x_at	FCGR1A Chr:1q21.2-q21.3
78	32		204971_at	CSTA Chr:3q21
79	82		227346_at	ZNFN1A1 Chr:7p13-p11.1
80	70		220146_at	TLR7 Chr:xp22.3
81	87		230391_at	--- ---
82	90		232843_s_at	DOCK8 Chr:9p24.3
83	78		225502_at	DOCK8 Chr:9p24.3
84	55		213537_at	HLA-DPA1 Chr:6p21.3
85	50		211990_at	HLA-DPA1 Chr:6p21.3
86	42		209823_x_at	HLA-DQB1 Chr:6p21.3
87	48		211656_x_at	HLA-DQB1 Chr:6p21.3
88	47		211654_x_at	HLA-DQB1 Chr:6p21.3
89	54		212998_x_at	HLA-DQB1 Chr:6p21.3
90	25		204150_at	STAB1 Chr:3p21.31
91	91		38487_at	STAB1 Chr:3p21.31

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:58:49

G8_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC