G7_using_S5

Super-paramagnetic Clustering of 77 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	54		213790_at	ADAM12 Chr:10q26.3
2	20		202952_s_at	ADAM12 Chr:10q26.3
3	68		226777_at	ADAM12 Chr:10q26.3
4	36		209596_at	DKFZp564I1922 Chr:xp22.33
5	31		205499_at	SRPUL Chr:xq21.33-q23
6	77		241981_at	FAM20A Chr:17q24.3
7	69		226804_at	FAM20A Chr:17q24.3
8	52		213125_at	OLFML2B Chr:1q23.1
9	17		202709_at	FMOD Chr:1q32
10	26		204114_at	NID2 Chr:14q21-q22
11	27		204464_s_at	EDNRA Chr:4q31.22
12	63		224833_at	ETS1 Chr:11q23.3
13	24	G201	204017_at	KDELR3 Chr:22q13.1
14	34	G201	208690_s_at	PDLIM1 Chr:10q22-q26.3
15	25	G200 G201	204083_s_at	TPM2 Chr:9p13.2-p13.1
16	13	G200 G201	202375_at	SEC24D Chr:4q27
17	21	G200 G201	202998_s_at	LOXL2 Chr:8p21.3-p21.2
18	4	G200 G201	201438_at	COL6A3 Chr:2q37
19	7	G200 G201	201852_x_at	COL3A1 Chr:2q31
20	56	G200 G201	215076_s_at	COL3A1 Chr:2q31
21	11	G200 G201	202291_s_at	MGP Chr:12p13.1-p12.3
22	12	G200 G201	202310_s_at	COL1A1 Chr:17q21.3-q22.1
23	1	G200 G201	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
24	6	G200 G201	201744_s_at	LUM Chr:12q21.3-q22
25	15	G200 G201	202404_s_at	COL1A2 Chr:7q22.1
26	39	G200 G201	211161_s_at	--- ---
27	14	G200 G201	202403_s_at	COL1A2 Chr:7q22.1
28	72	G200 G201	229218_at	COL1A2 Chr:7q22.1
29	16	G200 G201	202465_at	PCOLCE Chr:7q22
30	50	G200 G201	212488_at	COL5A1 Chr:9q34.2-q34.3
31	66	G200 G201	226311_at	--- ---
32	18	G200 G201	202766_s_at	FBN1 Chr:15q21.1
33	23	G200 G201	203851_at	IGFBP6 Chr:12q13
34	29	G200 G201	204682_at	LTBP2 Chr:14q24
35	74	G200 G201	232458_at	COL3A1 Chr:2q31
36	19	G200 G201	202878_s_at	C1QR1 Chr:20p11.22
37	47	G200 G201	212298_at	NRP1 Chr:10p12
38	2	G199 G200 G201	200700_s_at	KDELR2 Chr:7p22.2
39	62	G199 G200 G201	221730_at	COL5A2 Chr:2q14-q32
40	61	G199 G200 G201	221729_at	COL5A2 Chr:2q14-q32
41	33	G199 G200 G201	207714_s_at	SERPINH1 Chr:11q13.5
42	5	G199 G200 G201	201505_at	LAMB1 Chr:7q22
43	41	G199 G200 G201	211651_s_at	LAMB1 Chr:7q22
44	42	G199 G200 G201	211719_x_at	FN1 Chr:2q34
45	49	G199 G200 G201	212464_s_at	FN1 Chr:2q34
46	37	G199 G200 G201	210495_x_at	FN1 Chr:2q34
47	57	G199 G200 G201	216442_x_at	FN1 Chr:2q34
48	10	G199 G200 G201	202202_s_at	LAMA4 Chr:6q21
49	8	G199 G200 G201	202007_at	NID Chr:1q43
50	67	G199 G200 G201	226731_at	ITGA1 Chr:5q11.2
51	30	G199 G200 G201	204844_at	ENPEP Chr:4q25
52	3	G199 G200 G201	200771_at	LAMC1 Chr:1q31
53	43	G199 G200 G201	211964_at	COL4A2 Chr:13q34
54	45	G199 G200 G201	211980_at	COL4A1 Chr:13q34
55	44	G199 G200 G201	211966_at	COL4A2 Chr:13q34
56	46	G199 G200 G201	211981_at	COL4A1 Chr:13q34
57	55	G200 G201	214081_at	PLXDC1 Chr:17q21.1
58	71	G200 G201	228776_at	--- ---
59	70	G200 G201	227628_at	--- ---
60	53	G200 G201	213139_at	SNAI2 Chr:8q11
61	40	G200 G201	211343_s_at	COL13A1 Chr:10q22
62	64	G200 G201	225681_at	CTHRC1 Chr:8q22.3
63	65	G200 G201	225799_at	MGC4677 Chr:2p11.2
64	28	G201	204677_at	CDH5 Chr:16q22.1
65	32	G201	205572_at	ANGPT2 Chr:8p23.1
66	38	G201	211148_s_at	ANGPT2 Chr:8p23.1
67	48	G201	212364_at	MYO1B Chr:2q12-q34
68	9	G201	202112_at	VWF Chr:12p13.3
69	58	G201	218729_at	LXN Chr:3q25.32
70	59	G201	219134_at	ELTD1 Chr:1p33-p32
71	73	G201	230061_at	LOC116441 Chr:3q24
72	60	G201	219773_at	NOX4 Chr:11q14.2-q21
73	75	G201	236034_at	FLJ12847 Chr:8p23.1
74	76	G201	237261_at	FLJ12847 Chr:8p23.1
75	35		209156_s_at	COL6A2 Chr:21q22.3
76	22		203325_s_at	COL5A1 Chr:9q34.2-q34.3
77	51		212489_at	COL5A1 Chr:9q34.2-q34.3

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	12
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:56:05

G7_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=12)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC