G7_using_S4

Super-paramagnetic Clustering of 77 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=13)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	2		200700_s_at	KDELR2 Chr:7p22.2
2	13		202375_at	SEC24D Chr:4q27
3	54		213790_at	ADAM12 Chr:10q26.3
4	68		226777_at	ADAM12 Chr:10q26.3
5	20		202952_s_at	ADAM12 Chr:10q26.3
6	36		209596_at	DKFZp564I1922 Chr:xp22.33
7	31		205499_at	SRPUL Chr:xq21.33-q23
8	22		203325_s_at	COL5A1 Chr:9q34.2-q34.3
9	35		209156_s_at	COL6A2 Chr:21q22.3
10	51		212489_at	COL5A1 Chr:9q34.2-q34.3
11	21		202998_s_at	LOXL2 Chr:8p21.3-p21.2
12	24		204017_at	KDELR3 Chr:22q13.1
13	17		202709_at	FMOD Chr:1q32
14	25	G198	204083_s_at	TPM2 Chr:9p13.2-p13.1
15	28	G198	204677_at	CDH5 Chr:16q22.1
16	4	G198	201438_at	COL6A3 Chr:2q37
17	11	G198	202291_s_at	MGP Chr:12p13.1-p12.3
18	12	G198	202310_s_at	COL1A1 Chr:17q21.3-q22.1
19	50	G198	212488_at	COL5A1 Chr:9q34.2-q34.3
20	1	G198	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
21	6	G198	201744_s_at	LUM Chr:12q21.3-q22
22	7	G198	201852_x_at	COL3A1 Chr:2q31
23	14	G198	202403_s_at	COL1A2 Chr:7q22.1
24	15	G198	202404_s_at	COL1A2 Chr:7q22.1
25	39	G198	211161_s_at	--- ---
26	56	G198	215076_s_at	COL3A1 Chr:2q31
27	72	G198	229218_at	COL1A2 Chr:7q22.1
28	16	G198	202465_at	PCOLCE Chr:7q22
29	74	G198	232458_at	COL3A1 Chr:2q31
30	18	G198	202766_s_at	FBN1 Chr:15q21.1
31	29	G198	204682_at	LTBP2 Chr:14q24
32	66	G198	226311_at	--- ---
33	47	G198	212298_at	NRP1 Chr:10p12
34	23	G198	203851_at	IGFBP6 Chr:12q13
35	19	G198	202878_s_at	C1QR1 Chr:20p11.22
36	27	G198	204464_s_at	EDNRA Chr:4q31.22
37	49	G198	212464_s_at	FN1 Chr:2q34
38	42	G198	211719_x_at	FN1 Chr:2q34
39	57	G198	216442_x_at	FN1 Chr:2q34
40	37	G198	210495_x_at	FN1 Chr:2q34
41	33	G198	207714_s_at	SERPINH1 Chr:11q13.5
42	5	G198	201505_at	LAMB1 Chr:7q22
43	41	G198	211651_s_at	LAMB1 Chr:7q22
44	44	G198	211966_at	COL4A2 Chr:13q34
45	10	G198	202202_s_at	LAMA4 Chr:6q21
46	3	G198	200771_at	LAMC1 Chr:1q31
47	45	G198	211980_at	COL4A1 Chr:13q34
48	65	G198	225799_at	MGC4677 Chr:2p11.2
49	8	G198	202007_at	NID Chr:1q43
50	67	G198	226731_at	ITGA1 Chr:5q11.2
51	30	G198	204844_at	ENPEP Chr:4q25
52	46	G198	211981_at	COL4A1 Chr:13q34
53	43	G198	211964_at	COL4A2 Chr:13q34
54	55	G198	214081_at	PLXDC1 Chr:17q21.1
55	60	G198	219773_at	NOX4 Chr:11q14.2-q21
56	61	G198	221729_at	COL5A2 Chr:2q14-q32
57	62	G198	221730_at	COL5A2 Chr:2q14-q32
58	63	G198	224833_at	ETS1 Chr:11q23.3
59	48	G198	212364_at	MYO1B Chr:2q12-q34
60	40	G198	211343_s_at	COL13A1 Chr:10q22
61	53	G198	213139_at	SNAI2 Chr:8q11
62	32	G198	205572_at	ANGPT2 Chr:8p23.1
63	38	G198	211148_s_at	ANGPT2 Chr:8p23.1
64	75	G198	236034_at	FLJ12847 Chr:8p23.1
65	76	G198	237261_at	FLJ12847 Chr:8p23.1
66	26		204114_at	NID2 Chr:14q21-q22
67	34		208690_s_at	PDLIM1 Chr:10q22-q26.3
68	58		218729_at	LXN Chr:3q25.32
69	9		202112_at	VWF Chr:12p13.3
70	59		219134_at	ELTD1 Chr:1p33-p32
71	73		230061_at	LOC116441 Chr:3q24
72	69		226804_at	FAM20A Chr:17q24.3
73	52		213125_at	OLFML2B Chr:1q23.1
74	77		241981_at	FAM20A Chr:17q24.3
75	71		228776_at	--- ---
76	64		225681_at	CTHRC1 Chr:8q22.3
77	70		227628_at	--- ---

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	13
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:54:44

G7_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=13)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC