G7_using_S2

Super-paramagnetic Clustering of 77 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=4)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	7	G194	201852_x_at	COL3A1 Chr:2q31
2	56	G194	215076_s_at	COL3A1 Chr:2q31
3	5	G194	201505_at	LAMB1 Chr:7q22
4	58	G194	218729_at	LXN Chr:3q25.32
5	68	G194	226777_at	ADAM12 Chr:10q26.3
6	43	G194	211964_at	COL4A2 Chr:13q34
7	73	G194	230061_at	LOC116441 Chr:3q24
8	48	G194	212364_at	MYO1B Chr:2q12-q34
9	63	G194	224833_at	ETS1 Chr:11q23.3
10	9	G194	202112_at	VWF Chr:12p13.3
11	31	G194	205499_at	SRPUL Chr:xq21.33-q23
12	53	G194	213139_at	SNAI2 Chr:8q11
13	21	G194	202998_s_at	LOXL2 Chr:8p21.3-p21.2
14	65	G194	225799_at	MGC4677 Chr:2p11.2
15	37	G194	210495_x_at	FN1 Chr:2q34
16	42	G194	211719_x_at	FN1 Chr:2q34
17	57	G194	216442_x_at	FN1 Chr:2q34
18	49	G194	212464_s_at	FN1 Chr:2q34
19	51	G194	212489_at	COL5A1 Chr:9q34.2-q34.3
20	72	G194	229218_at	COL1A2 Chr:7q22.1
21	36	G194	209596_at	DKFZp564I1922 Chr:xp22.33
22	1	G194	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
23	13	G194	202375_at	SEC24D Chr:4q27
24	29	G194	204682_at	LTBP2 Chr:14q24
25	22	G194	203325_s_at	COL5A1 Chr:9q34.2-q34.3
26	61	G194	221729_at	COL5A2 Chr:2q14-q32
27	59	G193 G194	219134_at	ELTD1 Chr:1p33-p32
28	38	G193 G194	211148_s_at	ANGPT2 Chr:8p23.1
29	34	G193 G194	208690_s_at	PDLIM1 Chr:10q22-q26.3
30	46	G193 G194	211981_at	COL4A1 Chr:13q34
31	67	G193 G194	226731_at	ITGA1 Chr:5q11.2
32	62	G193 G194	221730_at	COL5A2 Chr:2q14-q32
33	75	G193 G194	236034_at	FLJ12847 Chr:8p23.1
34	35	G193 G194	209156_s_at	COL6A2 Chr:21q22.3
35	66	G193 G194	226311_at	--- ---
36	44	G193 G194	211966_at	COL4A2 Chr:13q34
37	60	G193 G194	219773_at	NOX4 Chr:11q14.2-q21
38	28	G193 G194	204677_at	CDH5 Chr:16q22.1
39	6	G193 G194	201744_s_at	LUM Chr:12q21.3-q22
40	19	G193 G194	202878_s_at	C1QR1 Chr:20p11.22
41	45	G193 G194	211980_at	COL4A1 Chr:13q34
42	30	G193 G194	204844_at	ENPEP Chr:4q25
43	77	G193 G194	241981_at	FAM20A Chr:17q24.3
44	40	G193 G194	211343_s_at	COL13A1 Chr:10q22
45	3	G193 G194	200771_at	LAMC1 Chr:1q31
46	50	G193 G194	212488_at	COL5A1 Chr:9q34.2-q34.3
47	25	G193 G194	204083_s_at	TPM2 Chr:9p13.2-p13.1
48	47	G193 G194	212298_at	NRP1 Chr:10p12
49	32	G193 G194	205572_at	ANGPT2 Chr:8p23.1
50	15	G194	202404_s_at	COL1A2 Chr:7q22.1
51	39	G194	211161_s_at	--- ---
52	17		202709_at	FMOD Chr:1q32
53	54		213790_at	ADAM12 Chr:10q26.3
54	12		202310_s_at	COL1A1 Chr:17q21.3-q22.1
55	41		211651_s_at	LAMB1 Chr:7q22
56	76		237261_at	FLJ12847 Chr:8p23.1
57	4		201438_at	COL6A3 Chr:2q37
58	11		202291_s_at	MGP Chr:12p13.1-p12.3
59	14		202403_s_at	COL1A2 Chr:7q22.1
60	55		214081_at	PLXDC1 Chr:17q21.1
61	26		204114_at	NID2 Chr:14q21-q22
62	18		202766_s_at	FBN1 Chr:15q21.1
63	16		202465_at	PCOLCE Chr:7q22
64	23		203851_at	IGFBP6 Chr:12q13
65	64		225681_at	CTHRC1 Chr:8q22.3
66	70		227628_at	--- ---
67	27		204464_s_at	EDNRA Chr:4q31.22
68	69		226804_at	FAM20A Chr:17q24.3
69	24		204017_at	KDELR3 Chr:22q13.1
70	33		207714_s_at	SERPINH1 Chr:11q13.5
71	20		202952_s_at	ADAM12 Chr:10q26.3
72	8		202007_at	NID Chr:1q43
73	10		202202_s_at	LAMA4 Chr:6q21
74	2		200700_s_at	KDELR2 Chr:7p22.2
75	52		213125_at	OLFML2B Chr:1q23.1
76	74		232458_at	COL3A1 Chr:2q31
77	71		228776_at	--- ---

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	4
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:52:27

G7_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=4)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC