G7_using_S1

Super-paramagnetic Clustering of 77 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	8		202007_at	NID Chr:1q43
2	10		202202_s_at	LAMA4 Chr:6q21
3	63		224833_at	ETS1 Chr:11q23.3
4	69		226804_at	FAM20A Chr:17q24.3
5	77		241981_at	FAM20A Chr:17q24.3
6	52		213125_at	OLFML2B Chr:1q23.1
7	22		203325_s_at	COL5A1 Chr:9q34.2-q34.3
8	50		212488_at	COL5A1 Chr:9q34.2-q34.3
9	51		212489_at	COL5A1 Chr:9q34.2-q34.3
10	35		209156_s_at	COL6A2 Chr:21q22.3
11	4	G191	201438_at	COL6A3 Chr:2q37
12	12	G191	202310_s_at	COL1A1 Chr:17q21.3-q22.1
13	7	G191	201852_x_at	COL3A1 Chr:2q31
14	6	G191	201744_s_at	LUM Chr:12q21.3-q22
15	56	G191	215076_s_at	COL3A1 Chr:2q31
16	1	G191	1556499_s_at	COL1A1 Chr:17q21.3-q22.1
17	39	G191	211161_s_at	--- ---
18	34	G191	208690_s_at	PDLIM1 Chr:10q22-q26.3
19	14	G191	202403_s_at	COL1A2 Chr:7q22.1
20	15	G191	202404_s_at	COL1A2 Chr:7q22.1
21	64	G191	225681_at	CTHRC1 Chr:8q22.3
22	72	G191	229218_at	COL1A2 Chr:7q22.1
23	11	G191	202291_s_at	MGP Chr:12p13.1-p12.3
24	16	G191	202465_at	PCOLCE Chr:7q22
25	23	G191	203851_at	IGFBP6 Chr:12q13
26	29	G191	204682_at	LTBP2 Chr:14q24
27	74		232458_at	COL3A1 Chr:2q31
28	66		226311_at	--- ---
29	18		202766_s_at	FBN1 Chr:15q21.1
30	17		202709_at	FMOD Chr:1q32
31	40		211343_s_at	COL13A1 Chr:10q22
32	24		204017_at	KDELR3 Chr:22q13.1
33	20		202952_s_at	ADAM12 Chr:10q26.3
34	54		213790_at	ADAM12 Chr:10q26.3
35	68		226777_at	ADAM12 Chr:10q26.3
36	36		209596_at	DKFZp564I1922 Chr:xp22.33
37	31		205499_at	SRPUL Chr:xq21.33-q23
38	3	G192	200771_at	LAMC1 Chr:1q31
39	67	G192	226731_at	ITGA1 Chr:5q11.2
40	65	G192	225799_at	MGC4677 Chr:2p11.2
41	43	G192	211964_at	COL4A2 Chr:13q34
42	45	G192	211980_at	COL4A1 Chr:13q34
43	44	G192	211966_at	COL4A2 Chr:13q34
44	46	G192	211981_at	COL4A1 Chr:13q34
45	2	G192	200700_s_at	KDELR2 Chr:7p22.2
46	55	G192	214081_at	PLXDC1 Chr:17q21.1
47	71	G192	228776_at	--- ---
48	41	G192	211651_s_at	LAMB1 Chr:7q22
49	53	G192	213139_at	SNAI2 Chr:8q11
50	5	G192	201505_at	LAMB1 Chr:7q22
51	21	G192	202998_s_at	LOXL2 Chr:8p21.3-p21.2
52	13	G192	202375_at	SEC24D Chr:4q27
53	27	G192	204464_s_at	EDNRA Chr:4q31.22
54	26	G192	204114_at	NID2 Chr:14q21-q22
55	25	G192	204083_s_at	TPM2 Chr:9p13.2-p13.1
56	33	G192	207714_s_at	SERPINH1 Chr:11q13.5
57	61	G192	221729_at	COL5A2 Chr:2q14-q32
58	62	G192	221730_at	COL5A2 Chr:2q14-q32
59	70	G192	227628_at	--- ---
60	28		204677_at	CDH5 Chr:16q22.1
61	9		202112_at	VWF Chr:12p13.3
62	59		219134_at	ELTD1 Chr:1p33-p32
63	32		205572_at	ANGPT2 Chr:8p23.1
64	38		211148_s_at	ANGPT2 Chr:8p23.1
65	48		212364_at	MYO1B Chr:2q12-q34
66	30		204844_at	ENPEP Chr:4q25
67	60		219773_at	NOX4 Chr:11q14.2-q21
68	75		236034_at	FLJ12847 Chr:8p23.1
69	76		237261_at	FLJ12847 Chr:8p23.1
70	58		218729_at	LXN Chr:3q25.32
71	73		230061_at	LOC116441 Chr:3q24
72	19		202878_s_at	C1QR1 Chr:20p11.22
73	47		212298_at	NRP1 Chr:10p12
74	37		210495_x_at	FN1 Chr:2q34
75	49		212464_s_at	FN1 Chr:2q34
76	42		211719_x_at	FN1 Chr:2q34
77	57		216442_x_at	FN1 Chr:2q34

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:51:23

G7_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC