G6_using_S6

Super-paramagnetic Clustering of 84 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	52		218662_s_at	HCAP-G Chr:4p16-p15
2	53		218663_at	HCAP-G Chr:4p16-p15
3	17		204033_at	TRIP13 Chr:5p15.33
4	15		203764_at	DLG7 Chr:14q22.2
5	55		218875_s_at	FBXO5 Chr:6q25-q26
6	11		203362_s_at	MAD2L1 Chr:4q27
7	59		219787_s_at	ECT2 Chr:3q26.1-q26.2
8	21		204240_s_at	SMC2L1 Chr:9q31.2
9	13		203560_at	GGH Chr:8q12.2
10	26		204822_at	TTK Chr:6q13-q21
11	39		209642_at	BUB1 Chr:2q14
12	2	G190	201292_at	TOP2A Chr:17q21-q22
13	19	G190	204162_at	KNTC2 Chr:18p11.31
14	10	G190	203358_s_at	EZH2 Chr:7q35-q36
15	56	G190	218883_s_at	KLIP1 Chr:4q35.1
16	78	G190	229305_at	KLIP1 Chr:4q35.1
17	27	G190	204825_at	MELK Chr:9p13.1
18	9	G190	203213_at	CDC2 Chr:10q21.1
19	20	G190	204170_s_at	CKS2 Chr:9q22
20	57	G190	219148_at	TOPK Chr:8p21.2
21	18	G190	204146_at	PIR51 Chr:12p13.2-p13.1
22	83	G190	238756_at	LOC283431 Chr:12q23.3
23	70	G190	225834_at	MGC57827 ---
24	1	G190	201291_s_at	TOP2A Chr:17q21-q22
25	14	G190	203755_at	BUB1B Chr:15q15
26	16	G190	204026_s_at	ZWINT Chr:10q21-q22
27	42	G190	210559_s_at	CDC2 Chr:10q21.1
28	49	G190	218039_at	NUSAP1 Chr:15q14
29	35		207828_s_at	CENPF Chr:1q32-q41
30	50		218355_at	KIF4A Chr:xq13.1
31	38		209172_s_at	CENPF Chr:1q32-q41
32	5		202580_x_at	FOXM1 Chr:12p13
33	25		204641_at	NEK2 Chr:1q32.2-q41
34	68		223381_at	CDCA1 Chr:1q23.2
35	82		236641_at	KIF14 Chr:1pter-q31.3
36	60		219918_s_at	ASPM Chr:1q31
37	44		213226_at	PMSCL1 Chr:4q27
38	71		226980_at	XTP1 Chr:5q12.1
39	73		227350_at	--- ---
40	43		213007_at	FLJ10719 Chr:15q25-q26
41	6		202589_at	TYMS Chr:18p11.32
42	51		218585_s_at	RAMP Chr:1q32.1-q32.2
43	64		222680_s_at	RAMP Chr:1q32.1-q32.2
44	23		204444_at	KIF11 Chr:10q24.1
45	63		222077_s_at	RACGAP1 Chr:12q13.12
46	7		202705_at	CCNB2 Chr:15q21.3
47	3		201890_at	RRM2 Chr:2p25-p24
48	40		209773_s_at	RRM2 Chr:2p25-p24
49	84		242560_at	FANCD2 Chr:3p26
50	4		202503_s_at	KIAA0101 Chr:15q22.1
51	66		222848_at	FKSG14 Chr:5p15.2-q12.3
52	22		204244_s_at	ASK Chr:7q21.3
53	37		208808_s_at	HMGB2 Chr:4q31
54	36		208079_s_at	STK6 Chr:20q13.2-q13.3
55	8		202870_s_at	CDC20 Chr:1p34.1
56	12		203554_x_at	PTTG1 Chr:5q35.1
57	54		218755_at	KIF20A Chr:5q31
58	79		229490_s_at	IQGAP3 Chr:1q23.1
59	80		230165_at	SGOL2 Chr:2q33.2
60	34		207165_at	HMMR Chr:5q33.2-qter
61	46		214710_s_at	CCNB1 Chr:5q12
62	48		218009_s_at	PRC1 Chr:15q26.1
63	77		228729_at	CCNB1 Chr:5q12
64	29		205046_at	CENPE Chr:4q24-q25
65	67		223229_at	HSPC150 Chr:1q32.1
66	28		204962_s_at	CENPA Chr:2p24-p21
67	30		205394_at	CHEK1 Chr:11q24-q24
68	41		210052_s_at	TPX2 Chr:20q11.2
69	24		204510_at	CDC7 Chr:1p22
70	72		227249_at	NDE1 Chr:16p13.11
71	47		216237_s_at	MCM5 Chr:22q13.1
72	76		228323_at	AF15Q14 Chr:15q14
73	81		235425_at	SGOL2 Chr:2q33.2
74	74		228033_at	E2F7 Chr:12q21.1
75	62		222039_at	LOC146909 Chr:17q21.31
76	75		228273_at	FLJ11029 Chr:17q23.2
77	45		213906_at	MYBL1 Chr:8q22
78	33		206632_s_at	APOBEC3B Chr:22q13.1-q13.2
79	61		220239_at	KLHL7 Chr:7p15.3
80	31		205967_at	HIST1H4C Chr:6p21.3
81	58		219306_at	KNSL7 Chr:3p21.32
82	65		222740_at	ATAD2 Chr:8q24.13
83	32		206102_at	KIAA0186 Chr:20p11.21
84	69		224428_s_at	CDCA7 Chr:2q31

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:50:12

G6_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC