G6_using_S5

Super-paramagnetic Clustering of 84 points in a 73 dimensional space.

Each point is a row.


Table of Contents

  • PCA
  • K Mutual Nearest Neighbors
  • Reordered Distance Matrix
  • Dendrogram with Stable Clusters
  • Reordered Data
  • A Dendrogram next to Reordered Data
  • Reordered Genes
  • Samples
  • Files for TreeView
  • Parameters for SPC

  • PCA of points

     

    K Mutual Nearest Neighbors (K=9)

     

    Reordered Distance Matrix

     

    Dendrogram with Stable clusters

     

    Reordered Data

     

    A Dendrogram next to Reordered Data

     

    Reordered Genes

    152 218662_s_atHCAP-G Chr:4p16-p15
    253 218663_atHCAP-G Chr:4p16-p15
    315 203764_atDLG7 Chr:14q22.2
    454 218755_atKIF20A Chr:5q31
    579 229490_s_atIQGAP3 Chr:1q23.1
    68 202870_s_atCDC20 Chr:1p34.1
    736 208079_s_atSTK6 Chr:20q13.2-q13.3
    875 228273_atFLJ11029 Chr:17q23.2
    941 210052_s_atTPX2 Chr:20q11.2
    1026 204822_atTTK Chr:6q13-q21
    1134 207165_atHMMR Chr:5q33.2-qter
    1246 214710_s_atCCNB1 Chr:5q12
    1377 228729_atCCNB1 Chr:5q12
    147 202705_atCCNB2 Chr:15q21.3
    1584 242560_atFANCD2 Chr:3p26
    1648 218009_s_atPRC1 Chr:15q26.1
    174 202503_s_atKIAA0101 Chr:15q22.1
    1843 213007_atFLJ10719 Chr:15q25-q26
    1966 222848_atFKSG14 Chr:5p15.2-q12.3
    2010 203358_s_atEZH2 Chr:7q35-q36
    2156 218883_s_atKLIP1 Chr:4q35.1
    2278 229305_atKLIP1 Chr:4q35.1
    2337 208808_s_atHMGB2 Chr:4q31
    2449 218039_atNUSAP1 Chr:15q14
    2514 203755_atBUB1B Chr:15q15
    2676 228323_atAF15Q14 Chr:15q14
    272 201292_atTOP2A Chr:17q21-q22
    2883 238756_atLOC283431 Chr:12q23.3
    291 201291_s_atTOP2A Chr:17q21-q22
    3040 209773_s_atRRM2 Chr:2p25-p24
    313 201890_atRRM2 Chr:2p25-p24
    3263 222077_s_atRACGAP1 Chr:12q13.12
    3323 204444_atKIF11 Chr:10q24.1
    3442 210559_s_atCDC2 Chr:10q21.1
    3516 204026_s_atZWINT Chr:10q21-q22
    3619 204162_atKNTC2 Chr:18p11.31
    379 203213_atCDC2 Chr:10q21.1
    3820 204170_s_atCKS2 Chr:9q22
    3957 219148_atTOPK Chr:8p21.2
    4070 225834_atMGC57827 ---
    4127 204825_atMELK Chr:9p13.1
    4218 204146_atPIR51 Chr:12p13.2-p13.1
    4355 218875_s_atFBXO5 Chr:6q25-q26
    4411 203362_s_atMAD2L1 Chr:4q27
    4559 219787_s_atECT2 Chr:3q26.1-q26.2
    4621 204240_s_atSMC2L1 Chr:9q31.2
    4713 203560_atGGH Chr:8q12.2
    4822 204244_s_atASK Chr:7q21.3
    4935 207828_s_atCENPF Chr:1q32-q41
    5050 218355_atKIF4A Chr:xq13.1
    5162 222039_atLOC146909 Chr:17q21.31
    5238 209172_s_atCENPF Chr:1q32-q41
    535 202580_x_atFOXM1 Chr:12p13
    5460 219918_s_atASPM Chr:1q31
    5525 204641_atNEK2 Chr:1q32.2-q41
    5651 218585_s_atRAMP Chr:1q32.1-q32.2
    5764 222680_s_atRAMP Chr:1q32.1-q32.2
    586 202589_atTYMS Chr:18p11.32
    5969 224428_s_atCDCA7 Chr:2q31
    6071 226980_atXTP1 Chr:5q12.1
    6144 213226_atPMSCL1 Chr:4q27
    6268 223381_atCDCA1 Chr:1q23.2
    6373 227350_at--- ---
    6482 236641_atKIF14 Chr:1pter-q31.3
    6558 219306_atKNSL7 Chr:3p21.32
    6665 222740_atATAD2 Chr:8q24.13
    6732 206102_atKIAA0186 Chr:20p11.21
    6880 230165_atSGOL2 Chr:2q33.2
    6912 203554_x_atPTTG1 Chr:5q35.1
    7028 204962_s_atCENPA Chr:2p24-p21
    7129 205046_atCENPE Chr:4q24-q25
    7230 205394_atCHEK1 Chr:11q24-q24
    7339 209642_atBUB1 Chr:2q14
    7467 223229_atHSPC150 Chr:1q32.1
    7517 204033_atTRIP13 Chr:5p15.33
    7624 204510_atCDC7 Chr:1p22
    7772 227249_atNDE1 Chr:16p13.11
    7847 216237_s_atMCM5 Chr:22q13.1
    7974 228033_atE2F7 Chr:12q21.1
    8033 206632_s_atAPOBEC3B Chr:22q13.1-q13.2
    8181 235425_atSGOL2 Chr:2q33.2
    8245 213906_atMYBL1 Chr:8q22
    8361 220239_atKLHL7 Chr:7p15.3
    8431 205967_atHIST1H4C Chr:6p21.3

    Samples Names

    116148.cel
    2191553.cel
    341076.cel
    4251780.cel
    52104.cel
    691317.cel
    7512.cel
    83106.cel
    9121430.cel
    1057547.cel
    1162574.cel
    127129.cel
    1334269.cel
    14111399.cel
    156470.cel
    16171497R.cel
    1735274.cel
    1821157.cel
    1946356bis.cel
    20261854R.cel
    217094bis.cel
    226890.cel
    23131437.cel
    2481308.cel
    2527190.cel
    2636283.cel
    271100R.cel
    2844345.cel
    291815.cel
    306580.cel
    3140300.cel
    326993.cel
    3332246.cel
    3433254.cel
    3530236.cel
    3638288.cel
    3750428.cel
    3820155R.cel
    3947360.cel
    4060566.cel
    41141453.cel
    42231621.cel
    4337284.cel
    4442328.cel
    45101360.cel
    4645349.cel
    47241622R.cel
    4828218.cel
    4951444.cel
    5031242.cel
    5148390.cel
    5254506.cel
    5355527.cel
    5459563.cel
    5522159.cel
    563930.cel
    5773ge205.cel
    5852458.cel
    5958558.cel
    6043344.cel
    6153461.cel
    626683.cel
    6315147.cel
    6429222.cel
    6561284.cel
    6649396.cel
    676157.cel
    687197.cel
    6941323.cel
    706365R.cel
    716784.cel
    7272ge197.cel
    7356528bis.cel

    Files for TreeView

    Raw Data Gene Tree Array Tree Clustered Data


    Parameters for SPC

    K (nearest neighbors)9
    Min T0.000000
    Max T0.250000
    Delta T0.004000
    Cycles3000
    GrowthTRUE
    Stable delta T4
    Ignore dropout size3

    Created by SPC_HTML_REPORT on 12-Aug-2004 00:49:07