G6_using_S3

Super-paramagnetic Clustering of 84 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	71		226980_at	XTP1 Chr:5q12.1
2	81		235425_at	SGOL2 Chr:2q33.2
3	72		227249_at	NDE1 Chr:16p13.11
4	69		224428_s_at	CDCA7 Chr:2q31
5	6		202589_at	TYMS Chr:18p11.32
6	43		213007_at	FLJ10719 Chr:15q25-q26
7	84		242560_at	FANCD2 Chr:3p26
8	23		204444_at	KIF11 Chr:10q24.1
9	20		204170_s_at	CKS2 Chr:9q22
10	37		208808_s_at	HMGB2 Chr:4q31
11	47		216237_s_at	MCM5 Chr:22q13.1
12	45		213906_at	MYBL1 Chr:8q22
13	51		218585_s_at	RAMP Chr:1q32.1-q32.2
14	78		229305_at	KLIP1 Chr:4q35.1
15	53		218663_at	HCAP-G Chr:4p16-p15
16	8		202870_s_at	CDC20 Chr:1p34.1
17	60	G189	219918_s_at	ASPM Chr:1q31
18	12	G189	203554_x_at	PTTG1 Chr:5q35.1
19	18	G189	204146_at	PIR51 Chr:12p13.2-p13.1
20	49	G189	218039_at	NUSAP1 Chr:15q14
21	21	G189	204240_s_at	SMC2L1 Chr:9q31.2
22	34	G189	207165_at	HMMR Chr:5q33.2-qter
23	63	G189	222077_s_at	RACGAP1 Chr:12q13.12
24	5	G189	202580_x_at	FOXM1 Chr:12p13
25	83	G189	238756_at	LOC283431 Chr:12q23.3
26	41	G189	210052_s_at	TPX2 Chr:20q11.2
27	80	G189	230165_at	SGOL2 Chr:2q33.2
28	61	G189	220239_at	KLHL7 Chr:7p15.3
29	46	G189	214710_s_at	CCNB1 Chr:5q12
30	48	G189	218009_s_at	PRC1 Chr:15q26.1
31	10	G189	203358_s_at	EZH2 Chr:7q35-q36
32	79	G189	229490_s_at	IQGAP3 Chr:1q23.1
33	54	G189	218755_at	KIF20A Chr:5q31
34	52	G189	218662_s_at	HCAP-G Chr:4p16-p15
35	30	G189	205394_at	CHEK1 Chr:11q24-q24
36	14	G189	203755_at	BUB1B Chr:15q15
37	15	G189	203764_at	DLG7 Chr:14q22.2
38	4	G188 G189	202503_s_at	KIAA0101 Chr:15q22.1
39	3	G188 G189	201890_at	RRM2 Chr:2p25-p24
40	7	G188 G189	202705_at	CCNB2 Chr:15q21.3
41	70	G188 G189	225834_at	MGC57827 ---
42	56	G188 G189	218883_s_at	KLIP1 Chr:4q35.1
43	19	G188 G189	204162_at	KNTC2 Chr:18p11.31
44	9	G188 G189	203213_at	CDC2 Chr:10q21.1
45	44	G188 G189	213226_at	PMSCL1 Chr:4q27
46	76	G188 G189	228323_at	AF15Q14 Chr:15q14
47	31	G188 G189	205967_at	HIST1H4C Chr:6p21.3
48	1	G188 G189	201291_s_at	TOP2A Chr:17q21-q22
49	2	G188 G189	201292_at	TOP2A Chr:17q21-q22
50	50	G188 G189	218355_at	KIF4A Chr:xq13.1
51	33	G188 G189	206632_s_at	APOBEC3B Chr:22q13.1-q13.2
52	66	G188 G189	222848_at	FKSG14 Chr:5p15.2-q12.3
53	28	G188 G189	204962_s_at	CENPA Chr:2p24-p21
54	82	G188 G189	236641_at	KIF14 Chr:1pter-q31.3
55	36	G188 G189	208079_s_at	STK6 Chr:20q13.2-q13.3
56	39	G189	209642_at	BUB1 Chr:2q14
57	13	G187 G189	203560_at	GGH Chr:8q12.2
58	68	G187 G189	223381_at	CDCA1 Chr:1q23.2
59	40	G187 G189	209773_s_at	RRM2 Chr:2p25-p24
60	27	G187 G189	204825_at	MELK Chr:9p13.1
61	32	G187 G189	206102_at	KIAA0186 Chr:20p11.21
62	25	G187 G189	204641_at	NEK2 Chr:1q32.2-q41
63	38	G187 G189	209172_s_at	CENPF Chr:1q32-q41
64	55	G187 G189	218875_s_at	FBXO5 Chr:6q25-q26
65	26	G187 G189	204822_at	TTK Chr:6q13-q21
66	74	G187 G189	228033_at	E2F7 Chr:12q21.1
67	57	G187 G189	219148_at	TOPK Chr:8p21.2
68	29	G187 G189	205046_at	CENPE Chr:4q24-q25
69	58	G187 G189	219306_at	KNSL7 Chr:3p21.32
70	59	G187 G189	219787_s_at	ECT2 Chr:3q26.1-q26.2
71	64	G187 G189	222680_s_at	RAMP Chr:1q32.1-q32.2
72	11	G187 G189	203362_s_at	MAD2L1 Chr:4q27
73	17	G187 G189	204033_at	TRIP13 Chr:5p15.33
74	65	G187 G189	222740_at	ATAD2 Chr:8q24.13
75	67	G187 G189	223229_at	HSPC150 Chr:1q32.1
76	77	G187 G189	228729_at	CCNB1 Chr:5q12
77	16	G187 G189	204026_s_at	ZWINT Chr:10q21-q22
78	62	G187 G189	222039_at	LOC146909 Chr:17q21.31
79	42	G187 G189	210559_s_at	CDC2 Chr:10q21.1
80	75	G187 G189	228273_at	FLJ11029 Chr:17q23.2
81	22	G189	204244_s_at	ASK Chr:7q21.3
82	35	G189	207828_s_at	CENPF Chr:1q32-q41
83	24		204510_at	CDC7 Chr:1p22
84	73		227350_at	--- ---

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:47:12

G6_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC