G6_using_S2

Super-paramagnetic Clustering of 84 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Reordered Distance Matrix

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=28)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	37		208808_s_at	HMGB2 Chr:4q31
2	6		202589_at	TYMS Chr:18p11.32
3	20		204170_s_at	CKS2 Chr:9q22
4	22		204244_s_at	ASK Chr:7q21.3
5	29		205046_at	CENPE Chr:4q24-q25
6	11		203362_s_at	MAD2L1 Chr:4q27
7	33		206632_s_at	APOBEC3B Chr:22q13.1-q13.2
8	5	G186	202580_x_at	FOXM1 Chr:12p13
9	18	G186	204146_at	PIR51 Chr:12p13.2-p13.1
10	32	G186	206102_at	KIAA0186 Chr:20p11.21
11	13	G186	203560_at	GGH Chr:8q12.2
12	25	G186	204641_at	NEK2 Chr:1q32.2-q41
13	30	G186	205394_at	CHEK1 Chr:11q24-q24
14	38	G186	209172_s_at	CENPF Chr:1q32-q41
15	4	G186	202503_s_at	KIAA0101 Chr:15q22.1
16	16	G186	204026_s_at	ZWINT Chr:10q21-q22
17	7	G186	202705_at	CCNB2 Chr:15q21.3
18	68	G186	223381_at	CDCA1 Chr:1q23.2
19	77	G186	228729_at	CCNB1 Chr:5q12
20	9	G186	203213_at	CDC2 Chr:10q21.1
21	17	G186	204033_at	TRIP13 Chr:5p15.33
22	26	G186	204822_at	TTK Chr:6q13-q21
23	21	G186	204240_s_at	SMC2L1 Chr:9q31.2
24	10	G186	203358_s_at	EZH2 Chr:7q35-q36
25	28	G186	204962_s_at	CENPA Chr:2p24-p21
26	34	G186	207165_at	HMMR Chr:5q33.2-qter
27	83	G186	238756_at	LOC283431 Chr:12q23.3
28	36	G186	208079_s_at	STK6 Chr:20q13.2-q13.3
29	1	G186	201291_s_at	TOP2A Chr:17q21-q22
30	3	G186	201890_at	RRM2 Chr:2p25-p24
31	14	G186	203755_at	BUB1B Chr:15q15
32	15	G186	203764_at	DLG7 Chr:14q22.2
33	41	G186	210052_s_at	TPX2 Chr:20q11.2
34	46	G186	214710_s_at	CCNB1 Chr:5q12
35	48	G186	218009_s_at	PRC1 Chr:15q26.1
36	49	G186	218039_at	NUSAP1 Chr:15q14
37	27	G186	204825_at	MELK Chr:9p13.1
38	50	G186	218355_at	KIF4A Chr:xq13.1
39	12	G186	203554_x_at	PTTG1 Chr:5q35.1
40	51	G186	218585_s_at	RAMP Chr:1q32.1-q32.2
41	35	G186	207828_s_at	CENPF Chr:1q32-q41
42	64	G186	222680_s_at	RAMP Chr:1q32.1-q32.2
43	73	G186	227350_at	--- ---
44	2	G186	201292_at	TOP2A Chr:17q21-q22
45	23	G186	204444_at	KIF11 Chr:10q24.1
46	56	G186	218883_s_at	KLIP1 Chr:4q35.1
47	57	G186	219148_at	TOPK Chr:8p21.2
48	60	G186	219918_s_at	ASPM Chr:1q31
49	40	G186	209773_s_at	RRM2 Chr:2p25-p24
50	58	G186	219306_at	KNSL7 Chr:3p21.32
51	79	G186	229490_s_at	IQGAP3 Chr:1q23.1
52	59	G186	219787_s_at	ECT2 Chr:3q26.1-q26.2
53	19	G186	204162_at	KNTC2 Chr:18p11.31
54	44	G186	213226_at	PMSCL1 Chr:4q27
55	61	G186	220239_at	KLHL7 Chr:7p15.3
56	66	G186	222848_at	FKSG14 Chr:5p15.2-q12.3
57	76	G186	228323_at	AF15Q14 Chr:15q14
58	43	G186	213007_at	FLJ10719 Chr:15q25-q26
59	67	G186	223229_at	HSPC150 Chr:1q32.1
60	71	G186	226980_at	XTP1 Chr:5q12.1
61	47	G186	216237_s_at	MCM5 Chr:22q13.1
62	78	G186	229305_at	KLIP1 Chr:4q35.1
63	84	G186	242560_at	FANCD2 Chr:3p26
64	74	G186	228033_at	E2F7 Chr:12q21.1
65	52	G186	218662_s_at	HCAP-G Chr:4p16-p15
66	42	G186	210559_s_at	CDC2 Chr:10q21.1
67	45	G186	213906_at	MYBL1 Chr:8q22
68	54	G186	218755_at	KIF20A Chr:5q31
69	8	G186	202870_s_at	CDC20 Chr:1p34.1
70	53	G186	218663_at	HCAP-G Chr:4p16-p15
71	72	G186	227249_at	NDE1 Chr:16p13.11
72	39		209642_at	BUB1 Chr:2q14
73	24		204510_at	CDC7 Chr:1p22
74	55		218875_s_at	FBXO5 Chr:6q25-q26
75	65		222740_at	ATAD2 Chr:8q24.13
76	80		230165_at	SGOL2 Chr:2q33.2
77	69		224428_s_at	CDCA7 Chr:2q31
78	75		228273_at	FLJ11029 Chr:17q23.2
79	63		222077_s_at	RACGAP1 Chr:12q13.12
80	81		235425_at	SGOL2 Chr:2q33.2
81	82		236641_at	KIF14 Chr:1pter-q31.3
82	31		205967_at	HIST1H4C Chr:6p21.3
83	62		222039_at	LOC146909 Chr:17q21.31
84	70		225834_at	MGC57827 ---

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	28
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:46:03

G6_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=28)

Reordered Distance Matrix

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC