G5_using_S5

Super-paramagnetic Clustering of 68 points in a 73 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	4		1554528_at	AAT1 Chr:3q12-q13.3
2	51		236222_at	AAT1 Chr:3q12-q13.3
3	50		235946_at	FLJ32783 Chr:Xp11.23
4	27		224463_s_at	MGC13040 Chr:11q22.2
5	53		236717_at	LOC165186 Chr:2p23.3
6	66		243087_at	NYD-SP29 Chr:1p22.3
7	67		243802_at	FLJ40427 Chr:3p21.2
8	56		237281_at	AKAP28 Chr:xq25
9	48		233516_s_at	PF6 Chr:1p12
10	62		240065_at	FLJ25333 Chr:5q15
11	58		238327_at	ECGF1 Chr:22q13.33
12	24		220636_at	DNAI2 Chr:17q25
13	33		229012_at	C9orf24 Chr:9p13.2
14	60		239776_at	--- Chr:5q22.1
15	52		236325_at	--- ---
16	36		229331_at	LOC132671 Chr:4q12
17	16	G181	210117_at	SPAG1 Chr:8q22.2
18	23	G181	220591_s_at	FLJ22843 Chr:xp11.4
19	32	G181	228450_at	LOC144100 Chr:11p15.2-p15.1
20	5	G181	1557636_a_at	LOC136288 Chr:7p12.3
21	41	G181	231077_at	MGC20470 Chr:11p15.4
22	63	G181	240857_at	DNAH9 Chr:17p12
23	1	G181	1553635_s_at	FLJ40873 Chr:1p31.3
24	3	G181	1554298_a_at	FLJ33620 Chr:3q26.2
25	57	G181	238116_at	DNCL2B Chr:16q23.3
26	13	G181	206197_at	NME5 Chr:5q31
27	42	G180 G181	231084_at	C10orf79 Chr:10q25.1
28	64	G180 G181	241310_at	--- ---
29	61	G180 G181	239916_at	LOC146845 Chr:17p13.1
30	38	G180 G181	230093_at	TSGA2 Chr:21q22.3
31	19	G180 G181	220168_at	CASC1 Chr:12p12.1
32	20	G180 G181	220269_at	FLJ23049 Chr:3q26.2
33	49	G180 G181	235658_at	--- ---
34	8	G180 G181	202587_s_at	AK1 Chr:9q34.1
35	22	G180 G181	220390_at	FLJ23598 Chr:11p11.2
36	15	G180 G181	208140_s_at	DKFZP586M1120 Chr:17p11.2
37	30	G180 G181	227091_at	KIAA1505 Chr:7p12.3
38	54	G180 G181	236909_at	LOC129881 Chr:2q31.1
39	25	G180 G181	222890_at	HSPC065 Chr:16q13
40	17	G180 G181	218876_at	CGI-38 Chr:16q22.1
41	21	G180 G181	220302_at	MAK Chr:6q22
42	39	G180 G181	230763_at	LOC128153 Chr:1q41
43	11	G181	205406_s_at	SPA17 Chr:11q24.2
44	6	G181	1558077_s_at	MDH1B Chr:2q34
45	2	G181	1554140_at	FLJ23129 Chr:1p31.3
46	31	G181	228100_at	LOC128344 Chr:1p13.2
47	40	G181	231068_at	FLJ31196 Chr:17p11.2
48	55	G181	237168_at	KIAA0266 Chr:13q12.2-q13.3
49	47	G181	232984_at	HYDIN Chr:16q22.2
50	45	G181	231549_at	MGC35194 Chr:1p36.21
51	10		205186_at	DNALI1 Chr:1p35.1
52	9		203397_s_at	GALNT3 Chr:2q24-q31
53	29		227081_at	DNALI1 Chr:1p35.1
54	37		229816_at	FLJ23129 Chr:1p31.3
55	44		231380_at	VEST1 Chr:8q13
56	59		238584_at	FLJ22527 Chr:2q37.3
57	7		1558487_a_at	HNLF Chr:7p13
58	26		223924_at	DKFZP434H0115 Chr:17q21.31
59	14		207624_s_at	RPGR Chr:xp11.4
60	34		229169_at	TTC18 Chr:10q22.3
61	35		229170_s_at	TTC18 Chr:10q22.3
62	28		226872_at	RFX2 Chr:19p13.3-p13.2
63	68		64900_at	CHST5 Chr:16q22.3
64	46		231729_s_at	CAPS Chr:19p13.3
65	65		241470_x_at	--- ---
66	12		205714_s_at	ZMYND10 Chr:3p21.3
67	43		231319_x_at	KIF9 Chr:3p21.31
68	18		219703_at	MNS1 Chr:15q21.2

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	64	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	70	94bis.cel
22	68	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	65	80.cel
31	40	300.cel
32	69	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	73	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	66	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	71	97.cel
69	41	323.cel
70	63	65R.cel
71	67	84.cel
72	72	ge197.cel
73	56	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:43:25

G5_using_S5

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC