G5_using_S4

Super-paramagnetic Clustering of 68 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	12		205714_s_at	ZMYND10 Chr:3p21.3
2	46		231729_s_at	CAPS Chr:19p13.3
3	65		241470_x_at	--- ---
4	29	G179	227081_at	DNALI1 Chr:1p35.1
5	16	G179	210117_at	SPAG1 Chr:8q22.2
6	1	G179	1553635_s_at	FLJ40873 Chr:1p31.3
7	21	G179	220302_at	MAK Chr:6q22
8	26	G179	223924_at	DKFZP434H0115 Chr:17q21.31
9	5	G179	1557636_a_at	LOC136288 Chr:7p12.3
10	39	G179	230763_at	LOC128153 Chr:1q41
11	41	G179	231077_at	MGC20470 Chr:11p15.4
12	38	G179	230093_at	TSGA2 Chr:21q22.3
13	61	G179	239916_at	LOC146845 Chr:17p13.1
14	57	G179	238116_at	DNCL2B Chr:16q23.3
15	10	G179	205186_at	DNALI1 Chr:1p35.1
16	64	G179	241310_at	--- ---
17	42	G179	231084_at	C10orf79 Chr:10q25.1
18	15	G179	208140_s_at	DKFZP586M1120 Chr:17p11.2
19	20	G179	220269_at	FLJ23049 Chr:3q26.2
20	22	G179	220390_at	FLJ23598 Chr:11p11.2
21	19	G179	220168_at	CASC1 Chr:12p12.1
22	3	G179	1554298_a_at	FLJ33620 Chr:3q26.2
23	49	G179	235658_at	--- ---
24	8	G179	202587_s_at	AK1 Chr:9q34.1
25	23		220591_s_at	FLJ22843 Chr:xp11.4
26	63		240857_at	DNAH9 Chr:17p12
27	13		206197_at	NME5 Chr:5q31
28	14		207624_s_at	RPGR Chr:xp11.4
29	6		1558077_s_at	MDH1B Chr:2q34
30	11		205406_s_at	SPA17 Chr:11q24.2
31	37		229816_at	FLJ23129 Chr:1p31.3
32	2		1554140_at	FLJ23129 Chr:1p31.3
33	31		228100_at	LOC128344 Chr:1p13.2
34	40		231068_at	FLJ31196 Chr:17p11.2
35	4		1554528_at	AAT1 Chr:3q12-q13.3
36	51		236222_at	AAT1 Chr:3q12-q13.3
37	25		222890_at	HSPC065 Chr:16q13
38	30		227091_at	KIAA1505 Chr:7p12.3
39	54		236909_at	LOC129881 Chr:2q31.1
40	47		232984_at	HYDIN Chr:16q22.2
41	45		231549_at	MGC35194 Chr:1p36.21
42	50		235946_at	FLJ32783 Chr:Xp11.23
43	53		236717_at	LOC165186 Chr:2p23.3
44	66		243087_at	NYD-SP29 Chr:1p22.3
45	56		237281_at	AKAP28 Chr:xq25
46	62		240065_at	FLJ25333 Chr:5q15
47	67		243802_at	FLJ40427 Chr:3p21.2
48	27		224463_s_at	MGC13040 Chr:11q22.2
49	55		237168_at	KIAA0266 Chr:13q12.2-q13.3
50	52		236325_at	--- ---
51	60		239776_at	--- Chr:5q22.1
52	68		64900_at	CHST5 Chr:16q22.3
53	17		218876_at	CGI-38 Chr:16q22.1
54	28		226872_at	RFX2 Chr:19p13.3-p13.2
55	32		228450_at	LOC144100 Chr:11p15.2-p15.1
56	35		229170_s_at	TTC18 Chr:10q22.3
57	34		229169_at	TTC18 Chr:10q22.3
58	24		220636_at	DNAI2 Chr:17q25
59	58		238327_at	ECGF1 Chr:22q13.33
60	33		229012_at	C9orf24 Chr:9p13.2
61	48		233516_s_at	PF6 Chr:1p12
62	36		229331_at	LOC132671 Chr:4q12
63	44		231380_at	VEST1 Chr:8q13
64	7		1558487_a_at	HNLF Chr:7p13
65	9		203397_s_at	GALNT3 Chr:2q24-q31
66	59		238584_at	FLJ22527 Chr:2q37.3
67	18		219703_at	MNS1 Chr:15q21.2
68	43		231319_x_at	KIF9 Chr:3p21.31

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:42:38

G5_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC