G5_using_S3

Super-paramagnetic Clustering of 68 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=5)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	67	G177	243802_at	FLJ40427 Chr:3p21.2
2	7	G177	1558487_a_at	HNLF Chr:7p13
3	43	G177	231319_x_at	KIF9 Chr:3p21.31
4	15	G177	208140_s_at	DKFZP586M1120 Chr:17p11.2
5	17	G177	218876_at	CGI-38 Chr:16q22.1
6	8	G177	202587_s_at	AK1 Chr:9q34.1
7	10	G177	205186_at	DNALI1 Chr:1p35.1
8	42	G177	231084_at	C10orf79 Chr:10q25.1
9	47	G177	232984_at	HYDIN Chr:16q22.2
10	53	G177	236717_at	LOC165186 Chr:2p23.3
11	18	G177	219703_at	MNS1 Chr:15q21.2
12	2	G177	1554140_at	FLJ23129 Chr:1p31.3
13	9	G177	203397_s_at	GALNT3 Chr:2q24-q31
14	5	G177	1557636_a_at	LOC136288 Chr:7p12.3
15	57	G177	238116_at	DNCL2B Chr:16q23.3
16	33	G177	229012_at	C9orf24 Chr:9p13.2
17	39		230763_at	LOC128153 Chr:1q41
18	36		229331_at	LOC132671 Chr:4q12
19	21		220302_at	MAK Chr:6q22
20	56		237281_at	AKAP28 Chr:xq25
21	32		228450_at	LOC144100 Chr:11p15.2-p15.1
22	65		241470_x_at	--- ---
23	27		224463_s_at	MGC13040 Chr:11q22.2
24	37		229816_at	FLJ23129 Chr:1p31.3
25	66		243087_at	NYD-SP29 Chr:1p22.3
26	3		1554298_a_at	FLJ33620 Chr:3q26.2
27	58		238327_at	ECGF1 Chr:22q13.33
28	50		235946_at	FLJ32783 Chr:Xp11.23
29	46		231729_s_at	CAPS Chr:19p13.3
30	41		231077_at	MGC20470 Chr:11p15.4
31	26		223924_at	DKFZP434H0115 Chr:17q21.31
32	62		240065_at	FLJ25333 Chr:5q15
33	16		210117_at	SPAG1 Chr:8q22.2
34	20		220269_at	FLJ23049 Chr:3q26.2
35	4		1554528_at	AAT1 Chr:3q12-q13.3
36	28		226872_at	RFX2 Chr:19p13.3-p13.2
37	29		227081_at	DNALI1 Chr:1p35.1
38	34		229169_at	TTC18 Chr:10q22.3
39	54		236909_at	LOC129881 Chr:2q31.1
40	22		220390_at	FLJ23598 Chr:11p11.2
41	55		237168_at	KIAA0266 Chr:13q12.2-q13.3
42	35		229170_s_at	TTC18 Chr:10q22.3
43	51		236222_at	AAT1 Chr:3q12-q13.3
44	45		231549_at	MGC35194 Chr:1p36.21
45	14	G178	207624_s_at	RPGR Chr:xp11.4
46	68	G178	64900_at	CHST5 Chr:16q22.3
47	63	G178	240857_at	DNAH9 Chr:17p12
48	13	G178	206197_at	NME5 Chr:5q31
49	38	G178	230093_at	TSGA2 Chr:21q22.3
50	23	G178	220591_s_at	FLJ22843 Chr:xp11.4
51	19	G178	220168_at	CASC1 Chr:12p12.1
52	61	G178	239916_at	LOC146845 Chr:17p13.1
53	49	G178	235658_at	--- ---
54	12	G178	205714_s_at	ZMYND10 Chr:3p21.3
55	25	G178	222890_at	HSPC065 Chr:16q13
56	59	G178	238584_at	FLJ22527 Chr:2q37.3
57	1	G178	1553635_s_at	FLJ40873 Chr:1p31.3
58	30	G178	227091_at	KIAA1505 Chr:7p12.3
59	64	G178	241310_at	--- ---
60	24	G178	220636_at	DNAI2 Chr:17q25
61	44	G178	231380_at	VEST1 Chr:8q13
62	60	G178	239776_at	--- Chr:5q22.1
63	48	G178	233516_s_at	PF6 Chr:1p12
64	11	G178	205406_s_at	SPA17 Chr:11q24.2
65	6	G178	1558077_s_at	MDH1B Chr:2q34
66	31	G178	228100_at	LOC128344 Chr:1p13.2
67	40	G178	231068_at	FLJ31196 Chr:17p11.2
68	52	G178	236325_at	--- ---

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	5
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:41:55

G5_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=5)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC