G5_using_S2

Super-paramagnetic Clustering of 68 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=19)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	25	G176	222890_at	HSPC065 Chr:16q13
2	9	G176	203397_s_at	GALNT3 Chr:2q24-q31
3	44	G176	231380_at	VEST1 Chr:8q13
4	15	G175 G176	208140_s_at	DKFZP586M1120 Chr:17p11.2
5	1	G175 G176	1553635_s_at	FLJ40873 Chr:1p31.3
6	5	G175 G176	1557636_a_at	LOC136288 Chr:7p12.3
7	31	G175 G176	228100_at	LOC128344 Chr:1p13.2
8	18	G175 G176	219703_at	MNS1 Chr:15q21.2
9	22	G175 G176	220390_at	FLJ23598 Chr:11p11.2
10	6	G175 G176	1558077_s_at	MDH1B Chr:2q34
11	16	G175 G176	210117_at	SPAG1 Chr:8q22.2
12	23	G175 G176	220591_s_at	FLJ22843 Chr:xp11.4
13	19	G175 G176	220168_at	CASC1 Chr:12p12.1
14	20	G175 G176	220269_at	FLJ23049 Chr:3q26.2
15	26	G175 G176	223924_at	DKFZP434H0115 Chr:17q21.31
16	61	G175 G176	239916_at	LOC146845 Chr:17p13.1
17	21	G175 G176	220302_at	MAK Chr:6q22
18	28	G175 G176	226872_at	RFX2 Chr:19p13.3-p13.2
19	32	G175 G176	228450_at	LOC144100 Chr:11p15.2-p15.1
20	56	G175 G176	237281_at	AKAP28 Chr:xq25
21	57	G175 G176	238116_at	DNCL2B Chr:16q23.3
22	35	G175 G176	229170_s_at	TTC18 Chr:10q22.3
23	3	G175 G176	1554298_a_at	FLJ33620 Chr:3q26.2
24	37	G175 G176	229816_at	FLJ23129 Chr:1p31.3
25	38	G175 G176	230093_at	TSGA2 Chr:21q22.3
26	11	G175 G176	205406_s_at	SPA17 Chr:11q24.2
27	39	G175 G176	230763_at	LOC128153 Chr:1q41
28	60	G175 G176	239776_at	--- Chr:5q22.1
29	63	G175 G176	240857_at	DNAH9 Chr:17p12
30	41	G175 G176	231077_at	MGC20470 Chr:11p15.4
31	2	G175 G176	1554140_at	FLJ23129 Chr:1p31.3
32	4	G175 G176	1554528_at	AAT1 Chr:3q12-q13.3
33	29	G175 G176	227081_at	DNALI1 Chr:1p35.1
34	42	G175 G176	231084_at	C10orf79 Chr:10q25.1
35	51	G175 G176	236222_at	AAT1 Chr:3q12-q13.3
36	64	G175 G176	241310_at	--- ---
37	34	G175 G176	229169_at	TTC18 Chr:10q22.3
38	40	G175 G176	231068_at	FLJ31196 Chr:17p11.2
39	46	G176	231729_s_at	CAPS Chr:19p13.3
40	53	G176	236717_at	LOC165186 Chr:2p23.3
41	10	G176	205186_at	DNALI1 Chr:1p35.1
42	54	G176	236909_at	LOC129881 Chr:2q31.1
43	36	G176	229331_at	LOC132671 Chr:4q12
44	55	G176	237168_at	KIAA0266 Chr:13q12.2-q13.3
45	14	G176	207624_s_at	RPGR Chr:xp11.4
46	50	G176	235946_at	FLJ32783 Chr:Xp11.23
47	12		205714_s_at	ZMYND10 Chr:3p21.3
48	24		220636_at	DNAI2 Chr:17q25
49	33		229012_at	C9orf24 Chr:9p13.2
50	43		231319_x_at	KIF9 Chr:3p21.31
51	45		231549_at	MGC35194 Chr:1p36.21
52	17		218876_at	CGI-38 Chr:16q22.1
53	48		233516_s_at	PF6 Chr:1p12
54	49		235658_at	--- ---
55	7		1558487_a_at	HNLF Chr:7p13
56	30		227091_at	KIAA1505 Chr:7p12.3
57	27		224463_s_at	MGC13040 Chr:11q22.2
58	47		232984_at	HYDIN Chr:16q22.2
59	8		202587_s_at	AK1 Chr:9q34.1
60	59		238584_at	FLJ22527 Chr:2q37.3
61	62		240065_at	FLJ25333 Chr:5q15
62	52		236325_at	--- ---
63	67		243802_at	FLJ40427 Chr:3p21.2
64	13		206197_at	NME5 Chr:5q31
65	58		238327_at	ECGF1 Chr:22q13.33
66	65		241470_x_at	--- ---
67	68		64900_at	CHST5 Chr:16q22.3
68	66		243087_at	NYD-SP29 Chr:1p22.3

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	19
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:41:02

G5_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=19)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC