G5_using_S1

Super-paramagnetic Clustering of 68 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	29		227081_at	DNALI1 Chr:1p35.1
2	10		205186_at	DNALI1 Chr:1p35.1
3	27		224463_s_at	MGC13040 Chr:11q22.2
4	53		236717_at	LOC165186 Chr:2p23.3
5	66		243087_at	NYD-SP29 Chr:1p22.3
6	56		237281_at	AKAP28 Chr:xq25
7	62		240065_at	FLJ25333 Chr:5q15
8	67		243802_at	FLJ40427 Chr:3p21.2
9	60		239776_at	--- Chr:5q22.1
10	52		236325_at	--- ---
11	25	G174	222890_at	HSPC065 Chr:16q13
12	38	G174	230093_at	TSGA2 Chr:21q22.3
13	61	G174	239916_at	LOC146845 Chr:17p13.1
14	42	G174	231084_at	C10orf79 Chr:10q25.1
15	64	G174	241310_at	--- ---
16	19	G174	220168_at	CASC1 Chr:12p12.1
17	49	G174	235658_at	--- ---
18	8	G174	202587_s_at	AK1 Chr:9q34.1
19	20	G174	220269_at	FLJ23049 Chr:3q26.2
20	55	G174	237168_at	KIAA0266 Chr:13q12.2-q13.3
21	57	G174	238116_at	DNCL2B Chr:16q23.3
22	16	G174	210117_at	SPAG1 Chr:8q22.2
23	23	G174	220591_s_at	FLJ22843 Chr:xp11.4
24	63	G174	240857_at	DNAH9 Chr:17p12
25	41	G174	231077_at	MGC20470 Chr:11p15.4
26	3	G174	1554298_a_at	FLJ33620 Chr:3q26.2
27	39	G174	230763_at	LOC128153 Chr:1q41
28	1	G174	1553635_s_at	FLJ40873 Chr:1p31.3
29	5	G174	1557636_a_at	LOC136288 Chr:7p12.3
30	2	G174	1554140_at	FLJ23129 Chr:1p31.3
31	31	G174	228100_at	LOC128344 Chr:1p13.2
32	47	G174	232984_at	HYDIN Chr:16q22.2
33	50	G174	235946_at	FLJ32783 Chr:Xp11.23
34	45	G174	231549_at	MGC35194 Chr:1p36.21
35	11	G174	205406_s_at	SPA17 Chr:11q24.2
36	6	G174	1558077_s_at	MDH1B Chr:2q34
37	13	G174	206197_at	NME5 Chr:5q31
38	32	G174	228450_at	LOC144100 Chr:11p15.2-p15.1
39	37	G174	229816_at	FLJ23129 Chr:1p31.3
40	40	G174	231068_at	FLJ31196 Chr:17p11.2
41	12		205714_s_at	ZMYND10 Chr:3p21.3
42	4		1554528_at	AAT1 Chr:3q12-q13.3
43	14		207624_s_at	RPGR Chr:xp11.4
44	51		236222_at	AAT1 Chr:3q12-q13.3
45	26		223924_at	DKFZP434H0115 Chr:17q21.31
46	21		220302_at	MAK Chr:6q22
47	17		218876_at	CGI-38 Chr:16q22.1
48	30		227091_at	KIAA1505 Chr:7p12.3
49	54		236909_at	LOC129881 Chr:2q31.1
50	15		208140_s_at	DKFZP586M1120 Chr:17p11.2
51	22		220390_at	FLJ23598 Chr:11p11.2
52	48		233516_s_at	PF6 Chr:1p12
53	58		238327_at	ECGF1 Chr:22q13.33
54	24		220636_at	DNAI2 Chr:17q25
55	33		229012_at	C9orf24 Chr:9p13.2
56	9		203397_s_at	GALNT3 Chr:2q24-q31
57	46		231729_s_at	CAPS Chr:19p13.3
58	65		241470_x_at	--- ---
59	59		238584_at	FLJ22527 Chr:2q37.3
60	18		219703_at	MNS1 Chr:15q21.2
61	43		231319_x_at	KIF9 Chr:3p21.31
62	44		231380_at	VEST1 Chr:8q13
63	68		64900_at	CHST5 Chr:16q22.3
64	28		226872_at	RFX2 Chr:19p13.3-p13.2
65	7		1558487_a_at	HNLF Chr:7p13
66	36		229331_at	LOC132671 Chr:4q12
67	35		229170_s_at	TTC18 Chr:10q22.3
68	34		229169_at	TTC18 Chr:10q22.3

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:40:11

G5_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC