G4_using_S6

Super-paramagnetic Clustering of 60 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	8		202890_at	MAP7 Chr:6q23.2
2	54		238498_at	--- ---
3	42		225822_at	MGC17299 Chr:1p34.1
4	29		213371_at	LDB3 Chr:10q22.3-q23.2
5	25		210944_s_at	CAPN3 Chr:15q15.1-q21.1
6	30		214475_x_at	CAPN3 Chr:15q15.1-q21.1
7	27		211890_x_at	CAPN3 Chr:15q15.1-q21.1
8	40		223572_at	KIAA1173 Chr:3p21.33
9	22		210169_at	KIAA0420 Chr:16p13.3
10	44	G173	228624_at	FLJ11155 Chr:4q32.1
11	6	G173	1562608_at	--- ---
12	24	G173	210657_s_at	PNUTL2 Chr:17q22-q23
13	20	G171 G172 G173	207659_s_at	MOBP Chr:3p21.33
14	51	G171 G172 G173	235794_at	MOBP Chr:3p21.33
15	57	G171 G172 G173	241717_at	LOC285281 Chr:3p21.33
16	36	G171 G172 G173	219750_at	FLJ11155 Chr:4q32.1
17	59	G171 G172 G173	242002_at	TCBA1 Chr:6q21
18	38	G171 G172 G173	221868_at	KIAA1155 Chr:2p13.2
19	1	G171 G172 G173	1553765_a_at	KIAA1900 Chr:6q16.3
20	4	G171 G172 G173	1557943_at	CNP Chr:17q21
21	53	G171 G172 G173	238008_at	MGC35308 Chr:6q27
22	26	G170 G171 G172 G173	211836_s_at	MOG Chr:6p22-p21.3
23	2	G170 G171 G172 G173	1555807_a_at	MOG Chr:6p22-p21.3
24	28	G170 G171 G172 G173	212829_at	--- ---
25	33	G170 G171 G172 G173	218094_s_at	C20orf35 Chr:20q13.12
26	17	G170 G171 G172 G173	205989_s_at	MOG Chr:6p22-p21.3
27	31	G170 G171 G172 G173	214650_x_at	MOG Chr:6p22-p21.3
28	7	G170 G171 G172 G173	1565809_x_at	--- Chr:1p36.33
29	14	G170 G171 G172 G173	204777_s_at	MAL Chr:2cen-q13
30	13	G170 G171 G172 G173	204733_at	KLK6 Chr:19q13.3
31	60	G170 G171 G172 G173	242765_at	MOBP Chr:3p21.33
32	48	G170 G171 G172 G173	232388_at	CNTNAP4 Chr:16q23.1
33	19	G170 G171 G172 G173	207323_s_at	MBP Chr:18q23
34	21	G170 G171 G172 G173	209072_at	MBP Chr:18q23
35	41	G170 G171 G172 G173	223699_at	CNDP1 Chr:18q22.3
36	34	G170 G171 G172 G173	218469_at	GREM1 Chr:15q13-q15
37	10	G171 G172 G173	204378_at	BCAS1 Chr:20q13.2-q13.3
38	32	G171 G172 G173	217613_at	FLJ11155 Chr:4q32.1
39	37	G172 G173	220026_at	CLCA4 Chr:1p31-p22
40	23	G172 G173	210193_at	MOBP Chr:3p21.33
41	46	G172 G173	229781_at	--- ---
42	3	G172 G173	1557481_a_at	--- ---
43	55	G172 G173	239575_at	TMEM10 Chr:10q23-q24
44	50	G172 G173	235476_at	TSBF1 Chr:3q26.1
45	18	G172 G173	207308_at	SLCO1A2 Chr:12p12
46	43	G173	227006_at	PPP1R14A Chr:19q13.1
47	47		231911_at	KIAA1189 Chr:2q24.2
48	49		235342_at	SPOCK3 Chr:4q32.3
49	52		236420_s_at	TMEM16D Chr:12q23.3
50	11		204547_at	RAB40B Chr:17q25.3
51	58		241833_at	--- ---
52	12		204681_s_at	RAPGEF5 Chr:7p15.3
53	15		205637_s_at	SH3GL3 Chr:15q24
54	5		1562473_at	--- ---
55	39		222862_s_at	AK5 Chr:1p31
56	16		205814_at	GRM3 Chr:7q21.1-q21.2
57	56		240053_x_at	--- ---
58	45		228891_at	LOC349236 Chr:9q22.2
59	9		204073_s_at	C11orf9 Chr:11q12-q13.1
60	35		219429_at	FA2H Chr:16q23

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:39:28

G4_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC