G4_using_S4

Super-paramagnetic Clustering of 60 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	42		225822_at	MGC17299 Chr:1p34.1
2	29		213371_at	LDB3 Chr:10q22.3-q23.2
3	12		204681_s_at	RAPGEF5 Chr:7p15.3
4	16		205814_at	GRM3 Chr:7q21.1-q21.2
5	18		207308_at	SLCO1A2 Chr:12p12
6	24		210657_s_at	PNUTL2 Chr:17q22-q23
7	1	G166	1553765_a_at	KIAA1900 Chr:6q16.3
8	10	G166	204378_at	BCAS1 Chr:20q13.2-q13.3
9	21	G166	209072_at	MBP Chr:18q23
10	41	G166	223699_at	CNDP1 Chr:18q22.3
11	7	G166	1565809_x_at	--- Chr:1p36.33
12	14	G166	204777_s_at	MAL Chr:2cen-q13
13	17	G166	205989_s_at	MOG Chr:6p22-p21.3
14	27	G166	211890_x_at	CAPN3 Chr:15q15.1-q21.1
15	2	G166	1555807_a_at	MOG Chr:6p22-p21.3
16	28	G166	212829_at	--- ---
17	19	G166	207323_s_at	MBP Chr:18q23
18	6	G166	1562608_at	--- ---
19	25	G166	210944_s_at	CAPN3 Chr:15q15.1-q21.1
20	30	G166	214475_x_at	CAPN3 Chr:15q15.1-q21.1
21	26	G166	211836_s_at	MOG Chr:6p22-p21.3
22	44	G166	228624_at	FLJ11155 Chr:4q32.1
23	13	G166	204733_at	KLK6 Chr:19q13.3
24	31	G166	214650_x_at	MOG Chr:6p22-p21.3
25	47	G166	231911_at	KIAA1189 Chr:2q24.2
26	48	G166	232388_at	CNTNAP4 Chr:16q23.1
27	60	G166	242765_at	MOBP Chr:3p21.33
28	22	G166	210169_at	KIAA0420 Chr:16p13.3
29	23	G166	210193_at	MOBP Chr:3p21.33
30	3	G166	1557481_a_at	--- ---
31	4	G166	1557943_at	CNP Chr:17q21
32	37	G166	220026_at	CLCA4 Chr:1p31-p22
33	55	G166	239575_at	TMEM10 Chr:10q23-q24
34	32	G166	217613_at	FLJ11155 Chr:4q32.1
35	38	G166	221868_at	KIAA1155 Chr:2p13.2
36	36	G166	219750_at	FLJ11155 Chr:4q32.1
37	51	G166	235794_at	MOBP Chr:3p21.33
38	20	G166	207659_s_at	MOBP Chr:3p21.33
39	57	G166	241717_at	LOC285281 Chr:3p21.33
40	59	G166	242002_at	TCBA1 Chr:6q21
41	46	G166	229781_at	--- ---
42	34	G166	218469_at	GREM1 Chr:15q13-q15
43	50	G166	235476_at	TSBF1 Chr:3q26.1
44	56	G166	240053_x_at	--- ---
45	53	G166	238008_at	MGC35308 Chr:6q27
46	43	G166	227006_at	PPP1R14A Chr:19q13.1
47	5		1562473_at	--- ---
48	58		241833_at	--- ---
49	11		204547_at	RAB40B Chr:17q25.3
50	15		205637_s_at	SH3GL3 Chr:15q24
51	40		223572_at	KIAA1173 Chr:3p21.33
52	49		235342_at	SPOCK3 Chr:4q32.3
53	52		236420_s_at	TMEM16D Chr:12q23.3
54	39		222862_s_at	AK5 Chr:1p31
55	45		228891_at	LOC349236 Chr:9q22.2
56	9		204073_s_at	C11orf9 Chr:11q12-q13.1
57	35		219429_at	FA2H Chr:16q23
58	33		218094_s_at	C20orf35 Chr:20q13.12
59	8		202890_at	MAP7 Chr:6q23.2
60	54		238498_at	--- ---

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	10
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:37:50

G4_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=10)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC