G4_using_S3

Super-paramagnetic Clustering of 60 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=16)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	5		1562473_at	--- ---
2	12		204681_s_at	RAPGEF5 Chr:7p15.3
3	55		239575_at	TMEM10 Chr:10q23-q24
4	23		210193_at	MOBP Chr:3p21.33
5	1		1553765_a_at	KIAA1900 Chr:6q16.3
6	39		222862_s_at	AK5 Chr:1p31
7	11		204547_at	RAB40B Chr:17q25.3
8	40		223572_at	KIAA1173 Chr:3p21.33
9	18		207308_at	SLCO1A2 Chr:12p12
10	49		235342_at	SPOCK3 Chr:4q32.3
11	22	G165	210169_at	KIAA0420 Chr:16p13.3
12	46	G165	229781_at	--- ---
13	17	G165	205989_s_at	MOG Chr:6p22-p21.3
14	4	G165	1557943_at	CNP Chr:17q21
15	8	G165	202890_at	MAP7 Chr:6q23.2
16	9	G165	204073_s_at	C11orf9 Chr:11q12-q13.1
17	20	G165	207659_s_at	MOBP Chr:3p21.33
18	28	G165	212829_at	--- ---
19	51	G165	235794_at	MOBP Chr:3p21.33
20	24	G165	210657_s_at	PNUTL2 Chr:17q22-q23
21	53	G165	238008_at	MGC35308 Chr:6q27
22	54	G165	238498_at	--- ---
23	3	G164 G165	1557481_a_at	--- ---
24	13	G164 G165	204733_at	KLK6 Chr:19q13.3
25	26	G164 G165	211836_s_at	MOG Chr:6p22-p21.3
26	30	G164 G165	214475_x_at	CAPN3 Chr:15q15.1-q21.1
27	6	G164 G165	1562608_at	--- ---
28	14	G164 G165	204777_s_at	MAL Chr:2cen-q13
29	19	G164 G165	207323_s_at	MBP Chr:18q23
30	21	G164 G165	209072_at	MBP Chr:18q23
31	27	G164 G165	211890_x_at	CAPN3 Chr:15q15.1-q21.1
32	29	G164 G165	213371_at	LDB3 Chr:10q22.3-q23.2
33	7	G164 G165	1565809_x_at	--- Chr:1p36.33
34	2	G164 G165	1555807_a_at	MOG Chr:6p22-p21.3
35	25	G164 G165	210944_s_at	CAPN3 Chr:15q15.1-q21.1
36	31	G164 G165	214650_x_at	MOG Chr:6p22-p21.3
37	41	G164 G165	223699_at	CNDP1 Chr:18q22.3
38	43	G164 G165	227006_at	PPP1R14A Chr:19q13.1
39	33	G164 G165	218094_s_at	C20orf35 Chr:20q13.12
40	44	G164 G165	228624_at	FLJ11155 Chr:4q32.1
41	47	G164 G165	231911_at	KIAA1189 Chr:2q24.2
42	35	G164 G165	219429_at	FA2H Chr:16q23
43	36	G164 G165	219750_at	FLJ11155 Chr:4q32.1
44	60	G164 G165	242765_at	MOBP Chr:3p21.33
45	42	G164 G165	225822_at	MGC17299 Chr:1p34.1
46	45	G164 G165	228891_at	LOC349236 Chr:9q22.2
47	37	G165	220026_at	CLCA4 Chr:1p31-p22
48	38	G165	221868_at	KIAA1155 Chr:2p13.2
49	57	G165	241717_at	LOC285281 Chr:3p21.33
50	50	G165	235476_at	TSBF1 Chr:3q26.1
51	34	G165	218469_at	GREM1 Chr:15q13-q15
52	16		205814_at	GRM3 Chr:7q21.1-q21.2
53	10		204378_at	BCAS1 Chr:20q13.2-q13.3
54	32		217613_at	FLJ11155 Chr:4q32.1
55	52		236420_s_at	TMEM16D Chr:12q23.3
56	15		205637_s_at	SH3GL3 Chr:15q24
57	48		232388_at	CNTNAP4 Chr:16q23.1
58	56		240053_x_at	--- ---
59	58		241833_at	--- ---
60	59		242002_at	TCBA1 Chr:6q21

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	16
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:37:10

G4_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=16)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC