G4_using_S2

Super-paramagnetic Clustering of 60 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=19)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	29		213371_at	LDB3 Chr:10q22.3-q23.2
2	9		204073_s_at	C11orf9 Chr:11q12-q13.1
3	30		214475_x_at	CAPN3 Chr:15q15.1-q21.1
4	16		205814_at	GRM3 Chr:7q21.1-q21.2
5	12		204681_s_at	RAPGEF5 Chr:7p15.3
6	26		211836_s_at	MOG Chr:6p22-p21.3
7	60		242765_at	MOBP Chr:3p21.33
8	11		204547_at	RAB40B Chr:17q25.3
9	19		207323_s_at	MBP Chr:18q23
10	39		222862_s_at	AK5 Chr:1p31
11	28		212829_at	--- ---
12	27	G163	211890_x_at	CAPN3 Chr:15q15.1-q21.1
13	25	G163	210944_s_at	CAPN3 Chr:15q15.1-q21.1
14	31	G163	214650_x_at	MOG Chr:6p22-p21.3
15	33	G163	218094_s_at	C20orf35 Chr:20q13.12
16	14	G163	204777_s_at	MAL Chr:2cen-q13
17	22	G163	210169_at	KIAA0420 Chr:16p13.3
18	44	G163	228624_at	FLJ11155 Chr:4q32.1
19	4	G163	1557943_at	CNP Chr:17q21
20	35	G163	219429_at	FA2H Chr:16q23
21	17	G163	205989_s_at	MOG Chr:6p22-p21.3
22	2	G163	1555807_a_at	MOG Chr:6p22-p21.3
23	6	G163	1562608_at	--- ---
24	5	G163	1562473_at	--- ---
25	7	G163	1565809_x_at	--- Chr:1p36.33
26	1	G163	1553765_a_at	KIAA1900 Chr:6q16.3
27	20	G163	207659_s_at	MOBP Chr:3p21.33
28	43	G163	227006_at	PPP1R14A Chr:19q13.1
29	32	G163	217613_at	FLJ11155 Chr:4q32.1
30	50	G163	235476_at	TSBF1 Chr:3q26.1
31	41	G163	223699_at	CNDP1 Chr:18q22.3
32	51	G163	235794_at	MOBP Chr:3p21.33
33	47	G163	231911_at	KIAA1189 Chr:2q24.2
34	54	G163	238498_at	--- ---
35	21	G163	209072_at	MBP Chr:18q23
36	40	G163	223572_at	KIAA1173 Chr:3p21.33
37	57	G163	241717_at	LOC285281 Chr:3p21.33
38	58	G163	241833_at	--- ---
39	53	G163	238008_at	MGC35308 Chr:6q27
40	10	G163	204378_at	BCAS1 Chr:20q13.2-q13.3
41	52	G163	236420_s_at	TMEM16D Chr:12q23.3
42	13	G163	204733_at	KLK6 Chr:19q13.3
43	56	G163	240053_x_at	--- ---
44	55	G163	239575_at	TMEM10 Chr:10q23-q24
45	23		210193_at	MOBP Chr:3p21.33
46	36		219750_at	FLJ11155 Chr:4q32.1
47	42		225822_at	MGC17299 Chr:1p34.1
48	8		202890_at	MAP7 Chr:6q23.2
49	34		218469_at	GREM1 Chr:15q13-q15
50	46		229781_at	--- ---
51	3		1557481_a_at	--- ---
52	24		210657_s_at	PNUTL2 Chr:17q22-q23
53	49		235342_at	SPOCK3 Chr:4q32.3
54	59		242002_at	TCBA1 Chr:6q21
55	37		220026_at	CLCA4 Chr:1p31-p22
56	45		228891_at	LOC349236 Chr:9q22.2
57	15		205637_s_at	SH3GL3 Chr:15q24
58	48		232388_at	CNTNAP4 Chr:16q23.1
59	18		207308_at	SLCO1A2 Chr:12p12
60	38		221868_at	KIAA1155 Chr:2p13.2

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	19
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:36:30

G4_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=19)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC