G4_using_S1

Super-paramagnetic Clustering of 60 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	42		225822_at	MGC17299 Chr:1p34.1
2	29		213371_at	LDB3 Chr:10q22.3-q23.2
3	40		223572_at	KIAA1173 Chr:3p21.33
4	22		210169_at	KIAA0420 Chr:16p13.3
5	25		210944_s_at	CAPN3 Chr:15q15.1-q21.1
6	30		214475_x_at	CAPN3 Chr:15q15.1-q21.1
7	27		211890_x_at	CAPN3 Chr:15q15.1-q21.1
8	44		228624_at	FLJ11155 Chr:4q32.1
9	6		1562608_at	--- ---
10	24		210657_s_at	PNUTL2 Chr:17q22-q23
11	8		202890_at	MAP7 Chr:6q23.2
12	54		238498_at	--- ---
13	17	G161 G162	205989_s_at	MOG Chr:6p22-p21.3
14	13	G161 G162	204733_at	KLK6 Chr:19q13.3
15	26	G161 G162	211836_s_at	MOG Chr:6p22-p21.3
16	41	G161 G162	223699_at	CNDP1 Chr:18q22.3
17	7	G161 G162	1565809_x_at	--- Chr:1p36.33
18	2	G161 G162	1555807_a_at	MOG Chr:6p22-p21.3
19	34	G161 G162	218469_at	GREM1 Chr:15q13-q15
20	28	G161 G162	212829_at	--- ---
21	33	G161 G162	218094_s_at	C20orf35 Chr:20q13.12
22	14	G161 G162	204777_s_at	MAL Chr:2cen-q13
23	31	G161 G162	214650_x_at	MOG Chr:6p22-p21.3
24	48	G161 G162	232388_at	CNTNAP4 Chr:16q23.1
25	19	G161 G162	207323_s_at	MBP Chr:18q23
26	60	G161 G162	242765_at	MOBP Chr:3p21.33
27	57	G161 G162	241717_at	LOC285281 Chr:3p21.33
28	36	G161 G162	219750_at	FLJ11155 Chr:4q32.1
29	59	G161 G162	242002_at	TCBA1 Chr:6q21
30	51	G161 G162	235794_at	MOBP Chr:3p21.33
31	38	G161 G162	221868_at	KIAA1155 Chr:2p13.2
32	20	G161 G162	207659_s_at	MOBP Chr:3p21.33
33	4	G161 G162	1557943_at	CNP Chr:17q21
34	45	G161 G162	228891_at	LOC349236 Chr:9q22.2
35	1	G161 G162	1553765_a_at	KIAA1900 Chr:6q16.3
36	21	G161 G162	209072_at	MBP Chr:18q23
37	55	G161 G162	239575_at	TMEM10 Chr:10q23-q24
38	47	G161 G162	231911_at	KIAA1189 Chr:2q24.2
39	32	G162	217613_at	FLJ11155 Chr:4q32.1
40	23	G162	210193_at	MOBP Chr:3p21.33
41	37	G162	220026_at	CLCA4 Chr:1p31-p22
42	3	G162	1557481_a_at	--- ---
43	46	G162	229781_at	--- ---
44	43	G162	227006_at	PPP1R14A Chr:19q13.1
45	49	G162	235342_at	SPOCK3 Chr:4q32.3
46	50	G162	235476_at	TSBF1 Chr:3q26.1
47	18	G162	207308_at	SLCO1A2 Chr:12p12
48	53	G162	238008_at	MGC35308 Chr:6q27
49	5		1562473_at	--- ---
50	12		204681_s_at	RAPGEF5 Chr:7p15.3
51	11		204547_at	RAB40B Chr:17q25.3
52	58		241833_at	--- ---
53	15		205637_s_at	SH3GL3 Chr:15q24
54	39		222862_s_at	AK5 Chr:1p31
55	16		205814_at	GRM3 Chr:7q21.1-q21.2
56	56		240053_x_at	--- ---
57	52		236420_s_at	TMEM16D Chr:12q23.3
58	10		204378_at	BCAS1 Chr:20q13.2-q13.3
59	9		204073_s_at	C11orf9 Chr:11q12-q13.1
60	35		219429_at	FA2H Chr:16q23

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:35:54

G4_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC