G3_using_S6

Super-paramagnetic Clustering of 69 points in a 74 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	42		221217_s_at	A2BP1 Chr:16p13.3
2	2		1553422_s_at	A2BP1 Chr:16p13.3
3	60		239357_at	--- ---
4	52		229254_at	DKFZp761N1114 Chr:1q32.1
5	8	G159	1557122_s_at	--- ---
6	65	G159	241807_x_at	--- ---
7	38	G159	219671_at	HPCAL4 Chr:1p34.2
8	31	G159	214044_at	RYR2 Chr:1q42.1-q43
9	54	G159	230551_at	--- ---
10	18	G159	205414_s_at	KIAA0672 Chr:17p12
11	49	G159	227702_at	CYP4X1 Chr:1p33
12	12	G157 G159	203998_s_at	SYT1 Chr:12cen-q21
13	21	G157 G159	205827_at	CCK Chr:3p22-p21.3
14	6	G157 G159	1556351_at	HCN1 Chr:5p12
15	3	G157 G159	1553864_at	DKFZp761H2121 Chr:10q26.13
16	41	G157 G159	220359_s_at	ARPP-21 Chr:3p22.1
17	63	G157 G159	241399_at	TAFA2 Chr:12q13.3-q14.1
18	19	G157 G159	205635_at	HAPIP Chr:3q21.2
19	68	G157 G159	244118_at	GABRA1 Chr:5q34-q35
20	23	G157 G159	206456_at	GABRA5 Chr:15q11.2-q12
21	45	G157 G159	224650_at	MAL2 Chr:8q23
22	22	G157 G159	206376_at	SLC6A15 Chr:12q21.3
23	24	G157 G159	206678_at	GABRA1 Chr:5q34-q35
24	28	G157 G159	210227_at	DLGAP2 Chr:8p23
25	61	G157 G159	239579_at	ABHD7 Chr:1p22.1
26	66	G157 G159	242404_at	--- ---
27	59	G157 G159	237384_x_at	--- ---
28	40	G157 G159	220030_at	STYK1 Chr:12p13.31
29	57	G157 G159	233002_at	KIAA1622 Chr:14q32.2
30	69	G157 G159	52837_at	KIAA1644 Chr:22q13
31	36	G157 G159	219425_at	SULT4A1 Chr:22q13.2-q13.31
32	56	G157 G159	232426_at	--- ---
33	64	G157 G159	241672_at	LOC400120 Chr:13q13.2
34	53	G157 G159	230137_at	FLJ30834 Chr:4q27
35	30	G157 G159	213921_at	SST Chr:3q28
36	7	G159	1556366_s_at	FLJ33708 Chr:6p24.3
37	4	G159	1556095_at	UNC13C Chr:15q21.1
38	39	G159	219937_at	TRHDE Chr:12q15-q21
39	25	G159	206780_at	GAD2 Chr:10p11.23
40	50	G159	228262_at	FLJ14503 Chr:xp22.13
41	13	G158 G160	203999_at	SYT1 Chr:12cen-q21
42	51	G158 G160	229039_at	SYN2 Chr:3p25
43	37	G158 G160	219659_at	ATP8A2 Chr:13q12-13
44	16	G158 G160	204546_at	KIAA0513 Chr:16q24.1
45	27	G158 G160	210040_at	SLC12A5 Chr:20q13.12
46	33	G158 G160	214811_at	KIAA0318 Chr:12q24.33
47	48	G158 G160	227053_at	PACSIN1 Chr:6p21.3
48	14	G158 G160	204081_at	NRGN Chr:11q24
49	26	G158 G160	209726_at	CA11 Chr:19q13.3
50	29	G158 G160	210247_at	SYN2 Chr:3p25
51	62	G158 G160	239765_at	--- ---
52	15	G158 G160	204229_at	SLC17A7 Chr:19q13
53	17	G158 G160	205113_at	NEF3 Chr:8p21
54	34	G158 G160	214945_at	NY-REN-7 Chr:5q35.3
55	1	G158 G160	1552714_at	CREG2 Chr:2q12.1
56	11	G158 G160	203798_s_at	VSNL1 Chr:2p24.3
57	55	G158 G160	231489_x_at	--- ---
58	5	G158 G160	1556096_s_at	UNC13C Chr:15q21.1
59	20	G158 G160	205691_at	SYNGR3 Chr:16p13
60	46	G158 G160	225111_s_at	NAPB Chr:20p12.3-p11.21
61	9	G160	1568612_at	GABRG2 Chr:5q31.1-q33.1
62	10	G160	202507_s_at	SNAP25 Chr:20p12-p11.2
63	35	G160	214956_at	--- ---
64	47	G160	226086_at	SYT13 Chr:11p12-p11
65	58	G160	236456_at	PTPN5 Chr:11p15.1
66	67	G160	243929_at	--- ---
67	44	G160	224209_s_at	GDA Chr:9q21.11-21.33
68	32		214098_at	KIAA1107 Chr:1p22.1
69	43		224164_at	TPM3 Chr:1q21.2

Samples Names

1	16	148.cel
2	19	1553.cel
3	4	1076.cel
4	25	1780.cel
5	2	104.cel
6	9	1317.cel
7	5	12.cel
8	3	106.cel
9	12	1430.cel
10	57	547.cel
11	62	574.cel
12	7	129.cel
13	34	269.cel
14	11	1399.cel
15	65	70.cel
16	17	1497R.cel
17	35	274.cel
18	21	157.cel
19	46	356bis.cel
20	26	1854R.cel
21	71	94bis.cel
22	69	90.cel
23	13	1437.cel
24	8	1308.cel
25	27	190.cel
26	36	283.cel
27	1	100R.cel
28	44	345.cel
29	18	15.cel
30	66	80.cel
31	40	300.cel
32	70	93.cel
33	32	246.cel
34	33	254.cel
35	30	236.cel
36	38	288.cel
37	50	428.cel
38	20	155R.cel
39	47	360.cel
40	60	566.cel
41	14	1453.cel
42	23	1621.cel
43	37	284.cel
44	42	328.cel
45	10	1360.cel
46	45	349.cel
47	24	1622R.cel
48	28	218.cel
49	51	444.cel
50	31	242.cel
51	48	390.cel
52	54	506.cel
53	55	527.cel
54	59	563.cel
55	22	159.cel
56	39	30.cel
57	74	ge205.cel
58	52	458.cel
59	58	558.cel
60	43	344.cel
61	53	461.cel
62	67	83.cel
63	15	147.cel
64	29	222.cel
65	6	1284.cel
66	49	396.cel
67	61	57.cel
68	72	97.cel
69	41	323.cel
70	64	65R.cel
71	68	84.cel
72	73	ge197.cel
73	56	528bis.cel
74	63	63.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	7
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:35:14

G3_using_S6

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=7)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC