G3_using_S4

Super-paramagnetic Clustering of 69 points in a 69 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	42		221217_s_at	A2BP1 Chr:16p13.3
2	2		1553422_s_at	A2BP1 Chr:16p13.3
3	60		239357_at	--- ---
4	52		229254_at	DKFZp761N1114 Chr:1q32.1
5	65		241807_x_at	--- ---
6	50		228262_at	FLJ14503 Chr:xp22.13
7	7		1556366_s_at	FLJ33708 Chr:6p24.3
8	8		1557122_s_at	--- ---
9	13	G151	203999_at	SYT1 Chr:12cen-q21
10	4	G151	1556095_at	UNC13C Chr:15q21.1
11	3	G151	1553864_at	DKFZp761H2121 Chr:10q26.13
12	15	G150 G151	204229_at	SLC17A7 Chr:19q13
13	17	G150 G151	205113_at	NEF3 Chr:8p21
14	48	G150 G151	227053_at	PACSIN1 Chr:6p21.3
15	1	G150 G151	1552714_at	CREG2 Chr:2q12.1
16	14	G150 G151	204081_at	NRGN Chr:11q24
17	67	G150 G151	243929_at	--- ---
18	5	G150 G151	1556096_s_at	UNC13C Chr:15q21.1
19	29	G150 G151	210247_at	SYN2 Chr:3p25
20	26	G150 G151	209726_at	CA11 Chr:19q13.3
21	51	G150 G151	229039_at	SYN2 Chr:3p25
22	34	G150 G151	214945_at	NY-REN-7 Chr:5q35.3
23	6	G150 G151	1556351_at	HCN1 Chr:5p12
24	55	G150 G151	231489_x_at	--- ---
25	19	G150 G151	205635_at	HAPIP Chr:3q21.2
26	37	G150 G151	219659_at	ATP8A2 Chr:13q12-13
27	16	G150 G151	204546_at	KIAA0513 Chr:16q24.1
28	27	G150 G151	210040_at	SLC12A5 Chr:20q13.12
29	33	G150 G151	214811_at	KIAA0318 Chr:12q24.33
30	56	G150 G151	232426_at	--- ---
31	18	G150 G151	205414_s_at	KIAA0672 Chr:17p12
32	54	G150 G151	230551_at	--- ---
33	58	G150 G151	236456_at	PTPN5 Chr:11p15.1
34	62	G150 G151	239765_at	--- ---
35	22	G150 G151	206376_at	SLC6A15 Chr:12q21.3
36	46	G150 G151	225111_s_at	NAPB Chr:20p12.3-p11.21
37	20	G150 G151	205691_at	SYNGR3 Chr:16p13
38	36	G150 G151	219425_at	SULT4A1 Chr:22q13.2-q13.31
39	9	G151	1568612_at	GABRG2 Chr:5q31.1-q33.1
40	35	G151	214956_at	--- ---
41	47	G151	226086_at	SYT13 Chr:11p12-p11
42	44	G151	224209_s_at	GDA Chr:9q21.11-21.33
43	10	G149	202507_s_at	SNAP25 Chr:20p12-p11.2
44	11	G149	203798_s_at	VSNL1 Chr:2p24.3
45	21	G149	205827_at	CCK Chr:3p22-p21.3
46	45	G149	224650_at	MAL2 Chr:8q23
47	68	G149	244118_at	GABRA1 Chr:5q34-q35
48	57	G149	233002_at	KIAA1622 Chr:14q32.2
49	12	G149	203998_s_at	SYT1 Chr:12cen-q21
50	24	G149	206678_at	GABRA1 Chr:5q34-q35
51	23	G149	206456_at	GABRA5 Chr:15q11.2-q12
52	28	G149	210227_at	DLGAP2 Chr:8p23
53	25	G149	206780_at	GAD2 Chr:10p11.23
54	59	G149	237384_x_at	--- ---
55	66	G149	242404_at	--- ---
56	69	G149	52837_at	KIAA1644 Chr:22q13
57	40	G149	220030_at	STYK1 Chr:12p13.31
58	31		214044_at	RYR2 Chr:1q42.1-q43
59	38		219671_at	HPCAL4 Chr:1p34.2
60	39		219937_at	TRHDE Chr:12q15-q21
61	63		241399_at	TAFA2 Chr:12q13.3-q14.1
62	53		230137_at	FLJ30834 Chr:4q27
63	61		239579_at	ABHD7 Chr:1p22.1
64	32		214098_at	KIAA1107 Chr:1p22.1
65	43		224164_at	TPM3 Chr:1q21.2
66	30		213921_at	SST Chr:3q28
67	41		220359_s_at	ARPP-21 Chr:3p22.1
68	49		227702_at	CYP4X1 Chr:1p33
69	64		241672_at	LOC400120 Chr:13q13.2

Samples Names

1	2	104.cel
2	8	1317.cel
3	4	12.cel
4	3	106.cel
5	11	1430.cel
6	53	547.cel
7	58	574.cel
8	6	129.cel
9	30	269.cel
10	10	1399.cel
11	60	70.cel
12	15	1497R.cel
13	31	274.cel
14	18	157.cel
15	42	356bis.cel
16	22	1854R.cel
17	66	94bis.cel
18	64	90.cel
19	12	1437.cel
20	7	1308.cel
21	23	190.cel
22	32	283.cel
23	1	100R.cel
24	40	345.cel
25	16	15.cel
26	61	80.cel
27	36	300.cel
28	65	93.cel
29	28	246.cel
30	29	254.cel
31	26	236.cel
32	34	288.cel
33	46	428.cel
34	17	155R.cel
35	43	360.cel
36	56	566.cel
37	13	1453.cel
38	20	1621.cel
39	33	284.cel
40	38	328.cel
41	9	1360.cel
42	41	349.cel
43	21	1622R.cel
44	24	218.cel
45	47	444.cel
46	27	242.cel
47	44	390.cel
48	50	506.cel
49	51	527.cel
50	55	563.cel
51	19	159.cel
52	35	30.cel
53	69	ge205.cel
54	48	458.cel
55	54	558.cel
56	39	344.cel
57	49	461.cel
58	62	83.cel
59	14	147.cel
60	25	222.cel
61	5	1284.cel
62	45	396.cel
63	57	57.cel
64	67	97.cel
65	37	323.cel
66	59	65R.cel
67	63	84.cel
68	68	ge197.cel
69	52	528bis.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	8
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:33:37

G3_using_S4

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=8)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC