G3_using_S3

Super-paramagnetic Clustering of 69 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=21)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	15	204229_at	SLC17A7 Chr:19q13
2	26	209726_at	CA11 Chr:19q13.3
3	58	236456_at	PTPN5 Chr:11p15.1
4	29	210247_at	SYN2 Chr:3p25
5	23	206456_at	GABRA5 Chr:15q11.2-q12
6	2	1553422_s_at	A2BP1 Chr:16p13.3
7	14	204081_at	NRGN Chr:11q24
8	35	214956_at	--- ---
9	17	205113_at	NEF3 Chr:8p21
10	30	213921_at	SST Chr:3q28
11	41	220359_s_at	ARPP-21 Chr:3p22.1
12	20	205691_at	SYNGR3 Chr:16p13
13	21	205827_at	CCK Chr:3p22-p21.3
14	24	206678_at	GABRA1 Chr:5q34-q35
15	16	204546_at	KIAA0513 Chr:16q24.1
16	44	224209_s_at	GDA Chr:9q21.11-21.33
17	12	203998_s_at	SYT1 Chr:12cen-q21
18	33	214811_at	KIAA0318 Chr:12q24.33
19	38	219671_at	HPCAL4 Chr:1p34.2
20	3	1553864_at	DKFZp761H2121 Chr:10q26.13
21	10	202507_s_at	SNAP25 Chr:20p12-p11.2
22	19	205635_at	HAPIP Chr:3q21.2
23	11	203798_s_at	VSNL1 Chr:2p24.3
24	52	229254_at	DKFZp761N1114 Chr:1q32.1
25	59	237384_x_at	--- ---
26	22	206376_at	SLC6A15 Chr:12q21.3
27	13	203999_at	SYT1 Chr:12cen-q21
28	27	210040_at	SLC12A5 Chr:20q13.12
29	28	210227_at	DLGAP2 Chr:8p23
30	43	224164_at	TPM3 Chr:1q21.2
31	62	239765_at	--- ---
32	8	1557122_s_at	--- ---
33	31	214044_at	RYR2 Chr:1q42.1-q43
34	40	220030_at	STYK1 Chr:12p13.31
35	54	230551_at	--- ---
36	63	241399_at	TAFA2 Chr:12q13.3-q14.1
37	25	206780_at	GAD2 Chr:10p11.23
38	68	244118_at	GABRA1 Chr:5q34-q35
39	6	1556351_at	HCN1 Chr:5p12
40	18	205414_s_at	KIAA0672 Chr:17p12
41	45	224650_at	MAL2 Chr:8q23
42	53	230137_at	FLJ30834 Chr:4q27
43	9	1568612_at	GABRG2 Chr:5q31.1-q33.1
44	34	214945_at	NY-REN-7 Chr:5q35.3
45	49	227702_at	CYP4X1 Chr:1p33
46	5	1556096_s_at	UNC13C Chr:15q21.1
47	39	219937_at	TRHDE Chr:12q15-q21
48	65	241807_x_at	--- ---
49	4	1556095_at	UNC13C Chr:15q21.1
50	66	242404_at	--- ---
51	46	225111_s_at	NAPB Chr:20p12.3-p11.21
52	57	233002_at	KIAA1622 Chr:14q32.2
53	1	1552714_at	CREG2 Chr:2q12.1
54	60	239357_at	--- ---
55	61	239579_at	ABHD7 Chr:1p22.1
56	67	243929_at	--- ---
57	42	221217_s_at	A2BP1 Chr:16p13.3
58	50	228262_at	FLJ14503 Chr:xp22.13
59	47	226086_at	SYT13 Chr:11p12-p11
60	56	232426_at	--- ---
61	64	241672_at	LOC400120 Chr:13q13.2
62	32	214098_at	KIAA1107 Chr:1p22.1
63	48	227053_at	PACSIN1 Chr:6p21.3
64	7	1556366_s_at	FLJ33708 Chr:6p24.3
65	69	52837_at	KIAA1644 Chr:22q13
66	37	219659_at	ATP8A2 Chr:13q12-13
67	51	229039_at	SYN2 Chr:3p25
68	36	219425_at	SULT4A1 Chr:22q13.2-q13.31
69	55	231489_x_at	--- ---

Samples Names

1	2	148.cel
2	3	1553.cel
3	1	1076.cel
4	4	1780.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	21
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:32:56

G3_using_S3

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=21)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC