G3_using_S2

Super-paramagnetic Clustering of 69 points in a 4 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=16)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	9		1568612_at	GABRG2 Chr:5q31.1-q33.1
2	1		1552714_at	CREG2 Chr:2q12.1
3	20		205691_at	SYNGR3 Chr:16p13
4	23		206456_at	GABRA5 Chr:15q11.2-q12
5	24		206678_at	GABRA1 Chr:5q34-q35
6	56		232426_at	--- ---
7	26	G148	209726_at	CA11 Chr:19q13.3
8	12	G148	203998_s_at	SYT1 Chr:12cen-q21
9	21	G147 G148	205827_at	CCK Chr:3p22-p21.3
10	15	G147 G148	204229_at	SLC17A7 Chr:19q13
11	30	G147 G148	213921_at	SST Chr:3q28
12	11	G147 G148	203798_s_at	VSNL1 Chr:2p24.3
13	14	G147 G148	204081_at	NRGN Chr:11q24
14	25	G147 G148	206780_at	GAD2 Chr:10p11.23
15	35	G147 G148	214956_at	--- ---
16	46	G147 G148	225111_s_at	NAPB Chr:20p12.3-p11.21
17	48	G147 G148	227053_at	PACSIN1 Chr:6p21.3
18	17	G147 G148	205113_at	NEF3 Chr:8p21
19	51	G147 G148	229039_at	SYN2 Chr:3p25
20	55	G147 G148	231489_x_at	--- ---
21	2	G147 G148	1553422_s_at	A2BP1 Chr:16p13.3
22	6	G147 G148	1556351_at	HCN1 Chr:5p12
23	49	G147 G148	227702_at	CYP4X1 Chr:1p33
24	50	G147 G148	228262_at	FLJ14503 Chr:xp22.13
25	61	G147 G148	239579_at	ABHD7 Chr:1p22.1
26	16	G148	204546_at	KIAA0513 Chr:16q24.1
27	34	G148	214945_at	NY-REN-7 Chr:5q35.3
28	31	G148	214044_at	RYR2 Chr:1q42.1-q43
29	45	G148	224650_at	MAL2 Chr:8q23
30	68	G148	244118_at	GABRA1 Chr:5q34-q35
31	19	G148	205635_at	HAPIP Chr:3q21.2
32	40	G148	220030_at	STYK1 Chr:12p13.31
33	44	G148	224209_s_at	GDA Chr:9q21.11-21.33
34	3	G148	1553864_at	DKFZp761H2121 Chr:10q26.13
35	53	G148	230137_at	FLJ30834 Chr:4q27
36	28	G148	210227_at	DLGAP2 Chr:8p23
37	7	G148	1556366_s_at	FLJ33708 Chr:6p24.3
38	59	G148	237384_x_at	--- ---
39	64	G148	241672_at	LOC400120 Chr:13q13.2
40	29		210247_at	SYN2 Chr:3p25
41	27		210040_at	SLC12A5 Chr:20q13.12
42	22		206376_at	SLC6A15 Chr:12q21.3
43	32		214098_at	KIAA1107 Chr:1p22.1
44	8		1557122_s_at	--- ---
45	37		219659_at	ATP8A2 Chr:13q12-13
46	39		219937_at	TRHDE Chr:12q15-q21
47	66		242404_at	--- ---
48	4		1556095_at	UNC13C Chr:15q21.1
49	57		233002_at	KIAA1622 Chr:14q32.2
50	67		243929_at	--- ---
51	42		221217_s_at	A2BP1 Chr:16p13.3
52	36		219425_at	SULT4A1 Chr:22q13.2-q13.31
53	43		224164_at	TPM3 Chr:1q21.2
54	5		1556096_s_at	UNC13C Chr:15q21.1
55	13		203999_at	SYT1 Chr:12cen-q21
56	47		226086_at	SYT13 Chr:11p12-p11
57	58		236456_at	PTPN5 Chr:11p15.1
58	62		239765_at	--- ---
59	60		239357_at	--- ---
60	65		241807_x_at	--- ---
61	33		214811_at	KIAA0318 Chr:12q24.33
62	54		230551_at	--- ---
63	52		229254_at	DKFZp761N1114 Chr:1q32.1
64	10		202507_s_at	SNAP25 Chr:20p12-p11.2
65	41		220359_s_at	ARPP-21 Chr:3p22.1
66	18		205414_s_at	KIAA0672 Chr:17p12
67	63		241399_at	TAFA2 Chr:12q13.3-q14.1
68	38		219671_at	HPCAL4 Chr:1p34.2
69	69		52837_at	KIAA1644 Chr:22q13

Samples Names

1	1	1357.cel
2	2	1795R.cel
3	3	1869RR.cel
4	4	55.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	16
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:32:32

G3_using_S2

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=16)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC