G3_using_S1

Super-paramagnetic Clustering of 69 points in a 84 dimensional space.

Each point is a row.

PCA

K Mutual Nearest Neighbors

Dendrogram with Stable Clusters

Reordered Data

A Dendrogram next to Reordered Data

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

1	13	G145	203999_at	SYT1 Chr:12cen-q21
2	1	G145	1552714_at	CREG2 Chr:2q12.1
3	15	G145	204229_at	SLC17A7 Chr:19q13
4	51	G145	229039_at	SYN2 Chr:3p25
5	48	G145	227053_at	PACSIN1 Chr:6p21.3
6	55	G145	231489_x_at	--- ---
7	34	G145	214945_at	NY-REN-7 Chr:5q35.3
8	14	G145	204081_at	NRGN Chr:11q24
9	11	G145	203798_s_at	VSNL1 Chr:2p24.3
10	35	G145	214956_at	--- ---
11	62	G145	239765_at	--- ---
12	46	G145	225111_s_at	NAPB Chr:20p12.3-p11.21
13	58	G145	236456_at	PTPN5 Chr:11p15.1
14	27	G145	210040_at	SLC12A5 Chr:20q13.12
15	17	G145	205113_at	NEF3 Chr:8p21
16	33	G145	214811_at	KIAA0318 Chr:12q24.33
17	37	G145	219659_at	ATP8A2 Chr:13q12-13
18	47	G145	226086_at	SYT13 Chr:11p12-p11
19	20	G145	205691_at	SYNGR3 Chr:16p13
20	44	G145	224209_s_at	GDA Chr:9q21.11-21.33
21	32	G145	214098_at	KIAA1107 Chr:1p22.1
22	26	G145	209726_at	CA11 Chr:19q13.3
23	29	G145	210247_at	SYN2 Chr:3p25
24	16	G144 G146	204546_at	KIAA0513 Chr:16q24.1
25	24	G144 G146	206678_at	GABRA1 Chr:5q34-q35
26	38	G144 G146	219671_at	HPCAL4 Chr:1p34.2
27	12	G144 G146	203998_s_at	SYT1 Chr:12cen-q21
28	31	G144 G146	214044_at	RYR2 Chr:1q42.1-q43
29	21	G144 G146	205827_at	CCK Chr:3p22-p21.3
30	6	G144 G146	1556351_at	HCN1 Chr:5p12
31	3	G144 G146	1553864_at	DKFZp761H2121 Chr:10q26.13
32	41	G144 G146	220359_s_at	ARPP-21 Chr:3p22.1
33	66	G144 G146	242404_at	--- ---
34	61	G144 G146	239579_at	ABHD7 Chr:1p22.1
35	68	G144 G146	244118_at	GABRA1 Chr:5q34-q35
36	28	G144 G146	210227_at	DLGAP2 Chr:8p23
37	45	G144 G146	224650_at	MAL2 Chr:8q23
38	23	G144 G146	206456_at	GABRA5 Chr:15q11.2-q12
39	22	G144 G146	206376_at	SLC6A15 Chr:12q21.3
40	30	G144 G146	213921_at	SST Chr:3q28
41	57	G144 G146	233002_at	KIAA1622 Chr:14q32.2
42	59	G144 G146	237384_x_at	--- ---
43	36	G146	219425_at	SULT4A1 Chr:22q13.2-q13.31
44	67	G146	243929_at	--- ---
45	56	G146	232426_at	--- ---
46	7	G146	1556366_s_at	FLJ33708 Chr:6p24.3
47	40	G146	220030_at	STYK1 Chr:12p13.31
48	53	G146	230137_at	FLJ30834 Chr:4q27
49	63	G146	241399_at	TAFA2 Chr:12q13.3-q14.1
50	18	G146	205414_s_at	KIAA0672 Chr:17p12
51	49	G146	227702_at	CYP4X1 Chr:1p33
52	64	G146	241672_at	LOC400120 Chr:13q13.2
53	43	G146	224164_at	TPM3 Chr:1q21.2
54	25	G146	206780_at	GAD2 Chr:10p11.23
55	50	G146	228262_at	FLJ14503 Chr:xp22.13
56	4	G146	1556095_at	UNC13C Chr:15q21.1
57	54	G146	230551_at	--- ---
58	39		219937_at	TRHDE Chr:12q15-q21
59	19		205635_at	HAPIP Chr:3q21.2
60	52		229254_at	DKFZp761N1114 Chr:1q32.1
61	60		239357_at	--- ---
62	8		1557122_s_at	--- ---
63	65		241807_x_at	--- ---
64	5		1556096_s_at	UNC13C Chr:15q21.1
65	69		52837_at	KIAA1644 Chr:22q13
66	9		1568612_at	GABRG2 Chr:5q31.1-q33.1
67	10		202507_s_at	SNAP25 Chr:20p12-p11.2
68	42		221217_s_at	A2BP1 Chr:16p13.3
69	2		1553422_s_at	A2BP1 Chr:16p13.3

Samples Names

1	25	161.cel
2	33	211.cel
3	11	1357.cel
4	29	1795R.cel
5	31	1869RR.cel
6	66	55.cel
7	18	148.cel
8	21	1553.cel
9	4	1076.cel
10	28	1780.cel
11	2	104.cel
12	10	1317.cel
13	5	12.cel
14	3	106.cel
15	14	1430.cel
16	65	547.cel
17	71	574.cel
18	7	129.cel
19	41	269.cel
20	13	1399.cel
21	75	70.cel
22	19	1497R.cel
23	42	274.cel
24	23	157.cel
25	53	356bis.cel
26	30	1854R.cel
27	81	94bis.cel
28	79	90.cel
29	15	1437.cel
30	9	1308.cel
31	32	190.cel
32	43	283.cel
33	1	100R.cel
34	51	345.cel
35	20	15.cel
36	76	80.cel
37	47	300.cel
38	80	93.cel
39	39	246.cel
40	40	254.cel
41	37	236.cel
42	45	288.cel
43	57	428.cel
44	22	155R.cel
45	54	360.cel
46	69	566.cel
47	16	1453.cel
48	26	1621.cel
49	44	284.cel
50	49	328.cel
51	12	1360.cel
52	52	349.cel
53	27	1622R.cel
54	35	218.cel
55	58	444.cel
56	38	242.cel
57	55	390.cel
58	61	506.cel
59	62	527.cel
60	68	563.cel
61	24	159.cel
62	46	30.cel
63	84	ge205.cel
64	59	458.cel
65	67	558.cel
66	50	344.cel
67	60	461.cel
68	77	83.cel
69	17	147.cel
70	36	222.cel
71	6	1284.cel
72	56	396.cel
73	70	57.cel
74	82	97.cel
75	48	323.cel
76	74	65R.cel
77	78	84.cel
78	83	ge197.cel
79	63	528bis.cel
80	73	63.cel
81	8	1297.cel
82	64	534.cel
83	34	212R.cel
84	72	57R.cel

Files for TreeView

Raw Data Gene Tree Array Tree Clustered Data

Parameters for SPC

K (nearest neighbors)	6
Min T	0.000000
Max T	0.250000
Delta T	0.004000
Cycles	3000
Growth	TRUE
Stable delta T	4
Ignore dropout size	3

Created by SPC_HTML_REPORT on 12-Aug-2004 00:31:56

G3_using_S1

Table of Contents

PCA of points

K Mutual Nearest Neighbors (K=6)

Dendrogram with Stable clusters

Reordered Data

A Dendrogram next to Reordered Data

Reordered Genes

Samples Names

Files for TreeView

Parameters for SPC